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NTIS 바로가기Korean journal of crop science = 韓國作物學會誌, v.55 no.4, 2010년, pp.371 - 378
Yim, Won-Cheol (Department of Plant Biotechnology, Dongguk Univ.) , Keum, Chang-Won (Bioinformatics and Molecular Design Research Center (BMDRC)) , Kim, Sae-Hwan (Macrogen Inc.) , Jang, Cheol-Seong (Division of Rio-resources Technoiogy, Kangwon National University) , Lee, Byung-Moo (Department of Plant Biotechnology, Dongguk Univ.)
For sensitive and accurate gene expression analysis, normalization of gene expression data against housekeeping genes is required. There are conventional housekeeping gene (e.g. ACT) that primarily function as an internal control of transcription. In this study, we performed an in silico analysis of...
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Arabidopsis Genome lnitiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
Andersen, C. L., J.L. Jensen and T.F. Orntoft 2004. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 64: 5245-5250.
Bommer, U. and B. Thiele. 2004. The translationally controlled tumour protein (TCTP). The International Journal of Biochemistry & Cell Biology 36: 379-385.
Brunner, A., I. Yakovlev and S. Strauss. 2004. Validating internal controls for quantitative plant gene expression studies. BMC Plant Biology 4: 14.
Bustin, S. A., V. Benes, T. Nolan, and M. W. Pfaffl. 2005. Quantitative real-time RT-PCR--a perspective. J. Mol. Endocrinol 34: 597-601.
Bustin, S. A. and S. Dorudi. 1998. Molecular assessment of tumour stage and disease recurrence using PCR-based assays. Mol. Med. Today 4: 389-396.
Bustin, S. 2000. Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J. Mol. Endocrinol 25: 169-193.
Bustin, S. 2002. Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J. Mol. Endocrinol 29: 23-39.
Cans, C., B. J. Passer, V. Shalak, V. Nancy-Portebois, V Crible, N. Amzallag, D. Allanic, R. Tufino, M. Argentini, D. Moras, G. Fiucci, B. Goud, M. Mirande, R. Amson and A. Telerman. 2003. Translationally controlled tumor protein acts as a guanine nucleotide dissociation inhibitor on the translation elongation factor eEF1A. Proc. Natl. Acad. Sci. U.S.A 100: 13892-13897.
Chitpatima, S. T., S. Makrides, R. Bandyopadhyay and G. Brawerma, 1988. Nucleotide sequence of a major messenger RNA for a 21 kilodalton polypeptide that is under translational control in mouse tumor cells. Nucleic Acids Res. 16: 2350.
Chuaqui, R. F., R. F. Bonner, C. J. M. Best, J. W. Gillespie, M. J. Flaig, S. M. Hewitt, J. L. Phillips, D. B. Krizman, M. A. Tangrea, M. Ahram, W. M. Linehan, V. Knezevic and M. R. Emmert-Buck. 2002. Post-analysis follow-up and validation of microarray experiments. Nat. Genet. 32: 509-514.
Czechowski, T., R. P. Bari, M. Stitt, W. Scheible, and M. K. Udvardi. 2004. Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J. 38: 366-379.
Dheda, K., J. F. Huggett, S. A. Bustin, M. A. Johnson, G. Rook and A. Zumla. 2004. Validation of housekeeping genes for normalizing RNA expression in real-time PCR. BioTechniques 37: 112-114, 116, 118-119.
Edgar, R., M. Domrachev and A. E. Lash. 2002. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30: 207-210.
Gachon, C., A. Mingam and B. Charrier. 2004. Real-time PCR: what relevance to plant studies? Journal of Experimental Botany 55: 1445-1454.
Goidin, D., A. Mamessier, M. J. Staquet, D. Schmitt and O. Berthier-Vergnes. 2001. Ribosomal 18S RNA prevails over glyceraldehyde-3-phosphate dehydrogenase and beta-actin genes as internal standard for quantitative comparison of mRNA levels in invasive and noninvasive human malanoma cell subpopulations. Anal. Biochem. 295: 17-21.
Jain, M. 2009. Genome-wide identification of novel internal control genes for normalization of gene expression during various stages of development in rice. Plant Science 176: 702-706.
de Jonge, H.J.M., R. S. N. Fehrmann, E. S. J. M. dc Bont, R. M. W. Hofstra, F. Gerbens, W. A. Kamps, E. G. E. de Vries, A. G. J. van der Zee, G. J. te Meerman and A. ter Elst. 2007. Evidence Based Selection of Housekeeping Genes. PLoS ONE 2: e898.
Kim, B., H. Nam, S. Kim, S. Kim, Y. Chang. 2003. Normalization of reverse transcription quantitative-PCR with housekeeping genes in rice. Biotechnol. Lett. 25: 1869-1872.
Lee, P.D., R. Sladek, C. M. Greenwood, T. J. Hudson. 2002. Control Genes and Variability: Absence of Ubiquitous Reference Transcripts in Diverse Mammalian Expression Studies. Genome Research 12: 292-297.
Lorkovic, Z. J. and A. Barta. 2002. Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. Nucleic Acids Res 30: 623-635.
Radonic, A., S. Thulke, I. M. Mackay, O. Landt, W. Siegert and A. Nitsche. 2004. Guideline to reference gene selection for quantitative real-time PCR. Biochem. Biophys. Res. Commun 313: 856-862.
Rao, K.V.N., L. Chen, M. Gnanasekar, and K. Ramaswamy. 2002. Cloning and characterization of a calcium-binding, histamine-releasing protein from Schistosoma mansoni. J. Biol. Chem. 277: 31207-31213.
Rhodes, D.R., J. Yu, K. Shanker, N. Deshpande, R. Varambally, D. Ghosh, T. Barrette, A. Pandey and A. M. Chinnaiyan. 2004. Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proceedings of the Proc. Natl. Acad. Sci. U.S.A 101: 9309-9314.
Sanchez, J.C., D. Schaller, F. Ravier. O. Golaz, S. Jaccoud, M. Belet, M. R. Wilkins, R. James, J. Deshusses, and D. Hochstrasser. 1997. Translationally controlled tumor protein: a protein identified in several nontumoral cells including erythrocytes. Electrophoresis 18: 150-155.
Schmittgen, T.D. and B. A. Zakrajsek. 2000. Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. Journal of Biochemical and Biophysical Methods 46: 69-81.
Sequencing ProjectInternational Rice Genome. 2005. The map-based sequence of the rice genome. Nature 436: 793-800.
Suzuki, T., P. Higgins and D. Crawford. 2000. Control selection for RNA quantitation. Biotechniques 29: 332-337.
Thaw, P., N. J. Baxter, A. M. Hounslow, C. Price, J. P. Waltho and C. J. Craven, C.J., 2001. Structure of TCTP reveals unexpected relationship with guanine nucleotide-free chaperones. Nat. Struct. Mol. Biol. 8:701-704.
Thellin, O., W. Zorzi, B. Lakaye, B. De Borman, B. Coumans, G. Hennen, T. Grisar, A. Igout, and E. Heinen. 1999. Housekeeping genes as internal standards: use and limits. Journal of Biotechnology 75: 291-295.
Thiele, H., M. Berger, A. Skalweit and B. Thiele. 2003. Expression of the gene and processed pseudogenes encoding the human and rabbit translationally controlled tumour protein (TCTP). European Journal of Biochemistry 267: 5473-5481.
Yenofsky, R., S. Cereghini, A. Krowczynska and G. Brawerman. 1983. Regulation of mRNA utilization in mouse erytholeukemia cells induced to differentiate by exposure to dimethyl sulfoxide. Mol. Cell. Biol 3:1197-1203.
Zhong, H. and J. W. Simons. 1999. Direct comparison of GAPDH, beta-action, cyclophilin, and 28S rRNA as internal standards for quantifying RNA levels under hypoxia. Biochem. Biophys. Res. Commun 259: 523-526.
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