최소 단어 이상 선택하여야 합니다.
최대 10 단어까지만 선택 가능합니다.
다음과 같은 기능을 한번의 로그인으로 사용 할 수 있습니다.
NTIS 바로가기PloS one, v.10 no.8, 2015년, pp.e0136736 -
Cho, Won Kyong (Department of Agricultural Biotechnology and Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151–) , Lian, Sen (921, Republic of Korea) , Kim, Sang-Min (Department of Agricultural Biotechnology and Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151–) , Seo, Bo Yoon (921, Republic of Korea) , Jung, Jin Kyo (Department of Agricultural Biotechnology and Plant Genomics and Breeding Institute, College of Agriculture and Life Sciences, Seoul National University, Seoul, 151–) , Kim, Kook-Hyung (921, Republic of Korea)
Rice stripe virus (RSV) has become a major pathogen of rice. To determine how the rice transcriptome is modified in response to RSV infection, we used RNA-Seq to perform a genome-wide gene expression analysis of a susceptible rice cultivar. The transcriptomes of RSV-infected samples were compared to...
1 Cho WK , Lian S , Kim S-M , Park S-H , Kim K-H . Current insights into research on Rice stripe virus . Plant Pathology Journal . 2013 ; 29 ( 2 ): 30 – 40 .
2 Goff SA , Ricke D , Lan T-H , Presting G , Wang R , Dunn M , et al A draft sequence of the rice genome ( Oryza sativa L. ssp. japonica ) . Science . 2002 ; 296 ( 5565 ): 92 – 100 . 11935018
3 Otuka A , Matsumura M , Sanada-Morimura S , Takeuchi H , Watanabe T , Ohtsu R , et al The 2008 overseas mass migration of the small brown planthopper, Laodelphax striatellus , and subsequent outbreak of rice stripe disease in western Japan . Applied Entomology and Zoology . 2010 ; 45 ( 2 ): 259 – 66 .
4 Wang HD , Chen JP , Zhang HM , Sun XL , Zhu JL , Wang AG , et al Recent Rice stripe virus epidemics in Zhejiang province, China, and experiments on sowing date, disease-yield loss relationships, and seedling susceptibility . Plant Disease . 2008 ; 92 ( 8 ): 1190 – 6 .
5 Yu L , Fan F , Yang J , Wang J , Zhu J , Li W , et al Screening of Rice Stripe Virus (RSV)-resistant germplasm from landraces of rice ( Oryza sativa L.) . Agricultural Science & Technology . 2014 ; 15 ( 5 ): 809 .
6 Kwon T , Lee JH , Park SK , Hwang UH , Cho JH , Kwak DY , et al Fine mapping and identification of candidate rice genes associated with qSTV11 SG , a major QTL for rice stripe disease resistance . Theoretical and Applied Genetics . 2012 ; 125 ( 5 ): 1 – 14 . PubMed Central PMCID: PMC22751999. 22366867
7 Sasaya T , Nakazono-Nagaoka E , Saika H , Aoki H , Hiraguri A , Netsu O , et al Transgenic strategies to confer resistance against viruses in rice plants . Frontiers in Microbiology . 2013 ; 4 .
8 Satoh K , Kondoh H , Sasaya T , Shimizu T , Choi IR , Omura T , et al Selective modification of rice ( Oryza sativa ) gene expression by Rice stripe virus infection . The Journal of general virology . 2010 ; 91 ( Pt 1 ): 294 – 305 . Epub 2009/10/02. 10.1099/vir.0.015990-0 . 19793907
9 Zheng W , Ma L , Zhao J , Li Z , Sun F , Lu X . Comparative transcriptome analysis of two rice varieties in response to rice stripe virus and small brown planthoppers during early interaction . PLoS One . 2013 ; 8 ( 12 ): e82126 10.1371/journal.pone.0082126 24358146
10 Guo W , Wu G , Yan F , Lu Y , Zheng H , Lin L , et al Identification of novel Oryza sativa miRNAs in deep sequencing-based small RNA libraries of rice infected with Rice stripe virus . PLoS One . 2012 ; 7 ( 10 ): e46443 10.1371/journal.pone.0046443 23071571
11 Guo C , Li L , Wang X , Liang C . Alterations in siRNA and miRNA expression profiles detected by deep sequencing of transgenic rice with siRNA-mediated viral resistance . PLoS One . 2015 ; 10 ( 1 ): e0116175 10.1371/journal.pone.0116175 25559820
12 Lin QY XL , Zhou ZJ , Xie LY , Wu ZJ . Studies on rice stripe. I. Distribution of and losses caused by the disease . Journal of Fujian Agricultural College . 1990 ; 19 : 421 – 5 .
13 Hibino H . Biology and epidemiology of rice viruses . Annu Rev Phytopathol . 1996 ; 34 : 249 – 74 . 15012543
14 Hayano-Saito Y , Tsuji T , Fujii K , Saito K , Iwasaki M , Saito A . Localization of the rice stripe disease resistance gene, Stv-b i , by graphical genotyping and linkage analyses with molecular markers . Theoretical and Applied Genetics . 1998 ; 96 ( 8 ): 1044 – 9 . .
15 Mortazavi A , Williams BA , McCue K , Schaeffer L , Wold B . Mapping and quantifying mammalian transcriptomes by RNA-Seq . Nature Methods . 2008 ; 5 ( 7 ): 621 – 8 . 10.1038/nmeth.1226 18516045
16 Conesa A , Götz S , García-Gómez JM , Terol J , Talón M , Robles M . Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research . Bioinformatics . 2005 ; 21 ( 18 ): 3674 – 6 . 16081474
17 Zhou T , Wang Y , Chen J-Q , Araki H , Jing Z , Jiang K , et al Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes . Molecular Genetics and Genomics . 2004 ; 271 ( 4 ): 402 – 15 . 15014983
18 Zhao F , Cai Z , Hu T , Yao H , Wang L , Dong N , et al Genetic analysis and molecular mapping of a novel gene conferring resistance to Rice stripe virus . Plant Molecular Biology Reporter . 2010 ; 28 ( 3 ): 512 – 8 . PubMed Central PMCID: PMC18943046.
19 Wu X , Zuo S , Chen Z , Zhang Y , Zhu J , Ma N , et al Fine mapping of qSTV11 TQ , a major gene conferring resistance to rice stripe disease . Theoretical and Applied Genetics 2011 ; 122 ( 5 ): 915 – 23 . PubMed Central PMCID: PMC21140255. 10.1007/s00122-010-1498-z 21140255
20 Shimizu T , Satoh K , Kikuchi S , Omura T . The repression of cell wall-and plastid-related genes and the induction of defense-related genes in rice plants infected with Rice dwarf virus . Molecular plant-microbe interactions: MPMI . 2007 ; 20 ( 3 ): 247 – 54 . 17378427
21 Bilgin DD , Zavala JA , Zhu J , Clough SJ , Ort DR , DeLucia E . Biotic stress globally downregulates photosynthesis genes . Plant, Cell and Environment . 2010 ; 33 ( 10 ): 1597 – 613 . 10.1111/j.1365-3040.2010.02167.x 20444224
22 Rahoutei J , García‐Luque I , Barón M . Inhibition of photosynthesis by viral infection: effect on PSII structure and function . Physiologia Plantarum . 2000 ; 110 ( 2 ): 286 – 92 .
23 Kong L , Wu J , Lu L , Xu Y , Zhou X . Interaction between Rice stripe virus disease-specific protein and host PsbP enhances virus symptoms . Molecular Plant . 2014 ; 7 ( 4 ): 691 – 708 . 10.1093/mp/sst158 24214893
24 Favaro R , Pinyopich A , Battaglia R , Kooiker M , Borghi L , Ditta G , et al MADS-box protein complexes control carpel and ovule development in Arabidopsis . Plant Cell . 2003 ; 15 ( 11 ): 2603 – 11 . 14555696
25 Higgins JA , Bailey PC , Laurie DA . Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses . PLoS One . 2010 ; 5 ( 4 ): e10065 10.1371/journal.pone.0010065 20419097
26 Yamamuro C , Ihara Y , Wu X , Noguchi T , Fujioka S , Takatsuto S , et al Loss of function of a rice brassinosteroid insensitive1 homolog prevents internode elongation and bending of the lamina joint . Plant Cell . 2000 ; 12 ( 9 ): 1591 – 605 . 11006334
27 Sato Y , Sentoku N , Miura Y , Hirochika H , Kitano H , Matsuoka M . Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants . EMBO Journal . 1999 ; 18 ( 4 ): 992 – 1002 . 10022841
28 Kusaba S , Kano-Murakami Y , Matsuoka M , Tamaoki M , Sakamoto T , Yamaguchi I , et al Alteration of hormone levels in transgenic tobacco plants overexpressing the rice homeobox gene OSH1 . Plant Physiology . 1998 ; 116 ( 2 ): 471 – 6 . 9489007
29 Zhang L-Y , Bai M-Y , Wu J , Zhu J-Y , Wang H , Zhang Z , et al Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis . Plant Cell . 2009 ; 21 ( 12 ): 3767 – 80 . 10.1105/tpc.109.070441 20009022
30 Ding W , Yu Z , Tong Y , Huang W , Chen H , Wu P . A transcription factor with a bHLH domain regulates root hair development in rice . Cell Research . 2009 ; 19 ( 11 ): 1309 – 11 . 10.1038/cr.2009.109 19752888
31 Dai M , Hu Y , Zhao Y , Liu H , Zhou D-X . A WUSCHEL-LIKE HOMEOBOX gene represses a YABBY gene expression required for rice leaf development . Plant Physiology . 2007 ; 144 ( 1 ): 380 – 90 . 17351053
32 Cnops G , Jover-Gil S , Peters JL , Neyt P , De Block S , Robles P , et al The rotunda2 mutants identify a role for the LEUNIG gene in vegetative leaf morphogenesis . Journal of Experimental Botany . 2004 ; 55 ( 402 ): 1529 – 39 . 15208345
33 Bennetzen JL . Transposable element contributions to plant gene and genome evolution . Plant Molecular Biology . 2000 ; 42 ( 1 ): 251 – 69 . 10688140
34 Capy P , Gasperi G , Biémont C , Bazin C . Stress and transposable elements: co‐evolution or useful parasites? Heredity . 2000 ; 85 ( 2 ): 101 – 6 . 11012710
35 Nosaka M , Itoh J-I , Nagato Y , Ono A , Ishiwata A , Sato Y . Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice . PLoS Genetics . 2012 ; 8 ( 9 ): e1002953 10.1371/journal.pgen.1002953 23028360
36 Wang Q , Liu Y , He J , Zheng X , Hu J , Liu Y , et al STV11 encodes a sulphotransferase and confers durable resistance to rice stripe virus . Nature Communications . 2014 ; 5 .
37 Jiang S , Lu Y , Li K , Lin L , Zheng H , Yan F , et al Heat shock protein 70 is necessary for Rice stripe virus infection in plants . Molecular Plant Pathology . 2014 ; 15 ( 9 ): 907 – 17 . 10.1111/mpp.12153 24823923
38 Sturn A , Quackenbush J , Trajanoski Z . Genesis: cluster analysis of microarray data . Bioinformatics . 2002 ; 18 ( 1 ): 207 – 8 . 11836235
39 Lehti-Shiu MD , Zou C , Hanada K , Shiu S-H . Evolutionary history and stress regulation of plant receptor-like kinase/pelle genes . Plant Physiology . 2009 ; 150 ( 1 ): 12 – 26 . 10.1104/pp.108.134353 19321712
*원문 PDF 파일 및 링크정보가 존재하지 않을 경우 KISTI DDS 시스템에서 제공하는 원문복사서비스를 사용할 수 있습니다.
오픈액세스 학술지에 출판된 논문
※ AI-Helper는 부적절한 답변을 할 수 있습니다.