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Method and apparatus for providing an expression data mining database 원문보기

IPC분류정보
국가/구분 United States(US) Patent 등록
국제특허분류(IPC7판)
  • G06F-017/30
출원번호 US-0705335 (2000-11-02)
발명자 / 주소
  • Balaban, David J.
  • Khurgin, Elina
출원인 / 주소
  • Affymetrix, Inc.
대리인 / 주소
    Zhou, Wei
인용정보 피인용 횟수 : 12  인용 특허 : 35

초록

According to the invention, a system and method for organizing expression information in a way that facilitates data mining. A database model is provided which may organize information relating to, e.g., sample preparation, expression analysis of experiment results, and intermediate and final result

대표청구항

According to the invention, a system and method for organizing expression information in a way that facilitates data mining. A database model is provided which may organize information relating to, e.g., sample preparation, expression analysis of experiment results, and intermediate and final result

이 특허에 인용된 특허 (35)

  1. Southern Edwin (Oxford GB2), Apparatus and method for analyzing polynucleotide sequences and method of generating oligonucleotide arrays.
  2. Fodor Stephen P. A. (Palo Alto CA) Pirrung Michael C. (Durham NC) Read J. Leighton (Palo Alto CA) Stryer Lubert (Stanford CA), Array of oligonucleotides on a solid substrate.
  3. Kaiser Michael W. ; Lyamichev Victor I. ; Lyamichev Natasha, Cleavage of nucleic acid acid using thermostable methoanococcus jannaschii FEN-1 endonucleases.
  4. Ip Nancy Y. (Stamford CT) Baum Howard J. (Stony Point NY), Compositions and methods useful for genetic analysis.
  5. Hubbell Earl A. (Mt. View CA) Lipshutz Robert J. (Palo Alto CA) Morris Macdonald S. (San Jose CA) Winkler James L. (Palo Alto CA), Computer-aided engineering system for design of sequence arrays and lithographic masks.
  6. Hubbell Earl A. (Mt. View CA) Morris MacDonald S. (San Jose CA) Winkler James L. (Palo Alto CA), Computer-aided engineering system for design of sequence arrays and lithographic masks.
  7. Hubbell Earl A. ; Morris MacDonald S. ; Winkler James L., Computer-aided engineering system for design of sequence arrays and lithographic masks.
  8. Chee Mark S., Computer-aided visualization and analysis system for sequence evaluation.
  9. Hooper Donald F. ; Newcomb Jay S., Database generator.
  10. Arnold Kenneth C. R. C. ; Waldo James H. ; Riggs Roger ; Wollrath Ann M. ; Jones Peter, Database system employing polymorphic entry and entry matching.
  11. Shuber Anthony P., Direct sequence identification of mutations by cleavage- and ligation-associated mutation-specific sequencing.
  12. Lockhart David J. ; Brown Eugene L. ; Wong Gordon G. ; Chee Mark S. ; Gingeras Thomas R., Expression monitoring by hybridization to high density oligonucleotide arrays.
  13. Balaban David J., Gene expression and evaluation system.
  14. Davis Ron ; Giaever Guri N. ; Shoemaker Dan, Highly parallel and sensitive method for identifying drugs and drug targets.
  15. Pirrung Michael C. (Durham NC) Read J. Leighton (Palo Alto CA) Fodor Stephen P. A. (Palo Alto CA) Stryer Lubert (Stanford CA), Large scale photolithographic solid phase synthesis of polypeptides and receptor binding screening thereof.
  16. Nova Michael P. ; Parandoosh Zahra ; Senyei Andrew E. ; Xiao Xiao-Yi ; David Gary S. ; Satoda Yozo ; Zhao Chanfeng ; Potash Hanan, Matrices with memories and uses thereof.
  17. Rothberg Jonathan Marc ; Deem Michael W. ; Simpson John W., Method and apparatus for identifying, classifying, or quantifying DNA sequences in a sample without sequencing.
  18. Balaban David J. ; Aggarwal Arun, Method and apparatus for providing a bioinformatics database.
  19. Balaban David J. ; Khurgin Elina, Method and apparatus for providing and expression data mining database.
  20. Sadiq Waqar ; Cummins Fred Arthur ; Swift ; II William Earl, Method and system for managing redundant objects in a distributed object system.
  21. Fodor Stephen P.A. ; Solas Dennis W. ; Dower William J., Method of detecting nucleic acids.
  22. Drmanac Radoje T. (Beograd YUX) Crkvenjakov Radomir B. (Beograd YUX), Method of determining an ordered sequence of subfragments of a nucleic acid fragment by hybridization of oligonucleotide.
  23. Fodor Stephen P. A. ; Solas Dennis W. ; Dower William J., Method of identifying nucleotide differences.
  24. Drmanac Radoje T. (Belgrade YUX) Crkvenjakov Radomir B. (Belgrade YUX), Method of sequencing by hybridization of oligonucleotide probes.
  25. Drmanac Radoje T. (Beograd YUX) Crkvenjakov Radomir B. (Beograd YUX), Method of sequencing by hybridization of oligonucleotide probes.
  26. Drmanac Radoje T. (Beograd YUX) Crkvenjakov Radomir B. (Beograd YUX), Method of sequencing of genoms by hybridization of oligonucleotide probes.
  27. Evans Steven (Omaha NE), Methods for identifying human hereditary disease patterns.
  28. Glahn et al., Methods for measuring relative amounts of nucleic acids in a complex mixture and retrieval of specific sequences therefrom.
  29. Fodor Stephen P. A. ; Solas Dennis W. ; Dower William J., Methods for nucleic acid analysis.
  30. Beattie Kenneth L., Microfabricated, flowthrough porous apparatus for discrete detection of binding reactions.
  31. Wittwer Carl T. ; Bernard Philip S., Multiplex genotyping using fluorescent hybridization probes.
  32. van Eikeren, Paul; van Eikeren, Joshua S., Object-oriented framework for chemical-process-development decision-support applications.
  33. Mullis Kary B. (Kensington CA), Process for amplifying nucleic acid sequences.
  34. Iyer Balakrishna Raghavendra ; Wang Min, Scalable set oriented classifier.
  35. Rine Jasper ; Ashby Matthew, Systems for generating and analyzing stimulus-response output signal matrices.

이 특허를 인용한 특허 (12)

  1. Conway, Andrew; Eastman, Peter; Snortland, Howard; Eynon, Barrett, Autonomous data mining.
  2. Mousses, Spyro; Farley, Toni R.; Kiefer, Jeffrey A.; Colbourn, Charles J.; Lee, Preston Victor, Biological data structure having multi-lateral, multi-scalar, and multi-dimensional relationships between molecular features and other data.
  3. Dowds, Carl A.; McIntyre, Jody C.; Erwin, Edgar E.; Wilson, Garret D.; Parmar, Pragna B.; Ohlson, Breck S.; Shippy, Richard D.; Cifuentes, Francisco J., Differential filtering of genetic data.
  4. Retallack, Diane M.; Squires, Charles H.; Watkins, David C.; Lee, Stacey L.; Gaertner, Frank H.; Shutter, Robert, Expression of mammalian proteins in Pseudomonas fluorescens.
  5. Retallack, Diane M.; Squires, Charles H.; Watkins, David C.; Lee, Stacey L.; Gaertner, Frank H.; Shutter, Robert, Expression of mammalian proteins in Pseudomonas fluorescens .
  6. Retallack, Diane M.; Squires, Charles H.; Watkins, David C.; Lee, Stacey L.; Gaertner, Frank H.; Shutter, Robert, Expression of mammalian proteins in pseudomonas fluorescens.
  7. Ibbotson, John Bryan; Starkey, Michael; Todd, Stephen James Paul, Method and tool for graphically defining an expression.
  8. Ramseier, Thomas M.; Coleman, Russell J.; Schneider, Jane C.; Hershberger, Charles D.; Retallack, Diane M.; Squires, Charles H., Method for rapidly screening microbial hosts to identify certain strains with improved yield and/or quality in the expression of heterologous proteins.
  9. Retallack, Diane M.; Squires, Charles H.; Ramseier, Thomas M.; Coleman, Russell J.; Schneider, Jane C.; Hershberger, Charles D., Method for rapidly screening microbial hosts to identify certain strains with improved yield and/or quality in the expression of heterologous proteins.
  10. Ramseier, Thomas M.; Jin, Hongfan; Squires, Charles H., Process for improved protein expression by strain engineering.
  11. Ramseier, Thomas M.; Jin, Hongfan; Squires, Charles H., Process for improved protein expression by strain engineering.
  12. Patel, Chirag; Fuernkranz, Hans; Greenstein, Michael, System for genetic surveillance and analysis.
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