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Methods and systems for tracking a position and torsional orientation of a patient's eye. In one embodiment, the present invention provides methods and software for registering a first image of an eye with a second image of an eye. In another embodiment, the present invention provides methods and so

Methods and systems for tracking a position and torsional orientation of a patient's eye. In one embodiment, the present invention provides methods and software for registering a first image of an eye with a second image of an eye. In another embodiment, the present invention provides methods and software for tracking a torsional movement of the eye. In a particular usage, the present invention tracks the torsional cyclorotation and translational movement of a patient's eye so as to improve the delivery of a laser energy to the patient's cornea.

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What is claimed is: 1. A method of registering a first image of an eye with a second image of the eye, wherein the first image and second image comprise at least a portion of a pupil and iris, and wherein a laser treatment of the eye is generated in association with the first image of the eye, the

What is claimed is: 1. A method of registering a first image of an eye with a second image of the eye, wherein the first image and second image comprise at least a portion of a pupil and iris, and wherein a laser treatment of the eye is generated in association with the first image of the eye, the method comprising: identifying a plurality of circumference sectors of the iris; selecting a plurality of markers on the iris of the eye in the first image, each marker being disposed in an associated sector; locating a plurality of corresponding markers on the iris in the second image; registering the first image of the eye and the second image of the eye by substantially matching a common reference point in the first and second images, unwrapping the iris in the first image and the second image about the common reference point to an unwrapped iris, and matching the markers on the unwrapped iris of the first image and the markers on the unwrapped iris of the second image; and centering and torsionally aligning the laser treatment with the second image of the eye. 2. The method of claim 1 wherein the common reference point is a pupil center. 3. The method of claim 1 wherein the common reference point is defined by a function of a pupil center and an iris center. 4. The method of claim 1 further comprising locating a pupil center, an iris center and an iris boundary, wherein selecting at least one marker comprises finding the position of the marker relative to at least one of the iris center and pupil center. 5. The method of claim 1 comprising smoothing at least one of the first image and second image. 6. The method of claim 1 wherein unwrapping comprises converting from Cartesian coordinates to polar coordinates. 7. The method of claim 1 wherein the iris has a radial orientation and a circumference orientation, and wherein identifying the sectors comprises dividing the iris into circumferentially offset sectors to circumferentially limit an area of search for the markers. 8. The method of claim 7 wherein dividing comprises creating 24 sectors, wherein each sector covers 15 degrees. 9. The method of claim 7 wherein the sectors comprise 24 sectors or more. 10. The method of claim 7 wherein the sectors comprise 24 sectors or less. 11. The method of claim 7 wherein the markers are high contrast iris patches, wherein selecting comprises locating the high-contrast iris patches within each sector. 12. The method of claim 11 comprising extracting properties from each high contrast iris patch. 13. The method of claim 1 wherein locating the marker in the second image comprises limiting a range of search to within 15 degrees or less from a position of the marker in the first image of the eye. 14. The method of claim 1 wherein selecting comprises drawing artificial landmarks on the first image of the eye. 15. The method of claim 1 comprising obtaining the first image with a first camera and obtaining the second image with a second camera. 16. The method of claim 1 wherein the second image is a frame from a video stream. 17. The method of claim 1 comprising estimating a torsional angular displacement between the markers in the first image and the second image. 18. The method of claim 17 wherein estimating the torsional angular displacement comprises correcting for elliptical shaped pupils. 19. The method of claim 17 wherein estimating a torsional angular displacement comprises fitting the estimated torsional rotation with an iterative weighted function to correct for sinusoidal distortions. 20. The method of claim 1 further wherein selecting comprises locating a plurality of markers on the iris. 21. The method of claim 1 wherein the markers comprise high contrast iris patches, wherein selecting comprises locating the high-contrast iris patches within each sector. 22. A method of performing laser eye surgery, the method comprising: measuring a wavefront measurement of the eye; obtaining a first image of the eye during the measuring of the wavefront measurement; generating a laser treatment for the eye based on the wavefront measurement; registering a second image of an eye under an optical axis of a laser beam with the first image by matching a plurality of discrete iris markers in the first image with corresponding iris markers in the second image; centering the laser treatment with the eye under the optical axis of the laser beam; monitoring a position and torsional orientation of the eye relative to the laser beam during the laser treatment using a series of tracking images, wherein the torsional orientation monitoring between tracking images is faster than the registering of the second image with the first image; and adjusting a delivery of the laser treatment to compensate for changes of the position and torsional orientation of the eye. 23. The method of claim 22 wherein registering comprises dividing the image into a circumference series of sectors, matching the markers in the first image, each of the plurality of markers being disposed in an associated sector so that the markers are circumferentially distributed, with corresponding markers in the second image, and wherein monitoring comprises tracking a position and orientation of a subset of the markers relative to a common reference point. 24. The method of claim 23 wherein the reference point is a pupil center. 25. The method of claim 23 wherein the reference point is defined by a function of a pupil center and an iris center. 26. The method of claim 23 wherein the markers are located in the iris of the eye. 27. The method of claim 23 wherein registering comprises locating at least one of an iris center and a pupil center in the first and second images. 28. The method of claim 22 wherein the first and second images of the eye comprise grayscale images of the iris, and wherein the markers comprise high contrast markers. 29. The method of claim 28, further comprising accounting for false matching of markers of the first and second images. 30. The method of claim 22 further comprising scaling a radial thickness of at least one of the images. 31. A system for registering a first image of an eye with a second image of an eye, the system comprising: a computer processor configured to receive a first image of an eye; an imaging device coupled to the computer processor that can obtain a second image of the eye; wherein the computer processor is configured to locate a common reference point in the first and second image of the eye and locate at least one marker in an iris of the first image and find a corresponding marker in the second image, wherein the computer processor unwraps the first and second images about the common reference point and scales the first and second image so that an orientation of the markers in the first image corresponds with an orientation of the markers in the second image, and cyclotorsionally registers the first and second image by substantially translationally matching the reference point and markers of the unwrapped first and second image. 32. The system of claim 31 wherein the reference point comprises at least one of a pupil center and an iris center. 33. The system of claim 31 comprising a wavefront measurement device that obtains a wavefront measurement of the eye, wherein the wavefront measurement device comprises an imaging assembly that obtains the first image of the eye during obtaining of the wavefront measurement. 34. The system of claim 31 comprising a laser assembly coupled to the computer processor for delivering a laser beam treatment to the eye. 35. The system of claim 31 wherein the imaging device is positioned so as to image the eye when the eye is positioned along an optical axis of the laser beam. 36. The system of claim 31 wherein the computer processor is configured to estimate a cyclotorsional rotation of the eye between to first image and second image. 37. A system for registering a first image of an eye with a second image of the eyes the system comprising: means for obtaining the first image; means for obtaining the second image of the eye, wherein the first image and second image comprise at least a portion of a pupil and iris; means for selecting a plurality of circumferentially distributed markers on the iris of the eye in the first image; means for locating corresponding markers on the iris in the second image; means for unwrapping the iris of the first and second image; and means for substantially matching a common reference point in the first and second images and estimating the torsional rotation between the markers in the unwrapped iris of the first image and the markers in the unwrapped iris of the second image. 38. A method of registering a first image of an eye with a second image of the eye, wherein the first image and second image comprise at least a portion of a pupil and iris, and wherein a laser treatment of the eye is generated in association with the first image of the eye, the method comprising: unwrapping the iris in the first image and the second image; dividing the unwrapped iris into sectors; selecting a plurality of markers on the iris of the eye in the first image, wherein the markers are high contrast iris patches, and wherein selecting comprises locating the high-contrast iris patches within each sector; locating a corresponding marker on the iris in the second image for each marker of the first image; registering the first image of the eye and the second image of the eye by substantially matching a common reference paint in the first and second images and matching the marker on the iris of the first image and the marker on the iris of the second image of the eye; and centering and torsionally aligning the laser treatment with the second image of the eye. 39. The method of claim 38 comprising extracting properties from each high contrast iris patch. 40. A method of registering a first image of an eye with a second image of the eye, wherein the first image and second image comprise at least a portion of a pupil and iris, and wherein a laser treatment of the eye is generated in association with the first image of the eye, the method comprising: selecting at least one marker on the iris of the eye in the first image; locating a corresponding marker on the iris in the second image; registering the first image of the eye and the second image of the eye by substantially matching a common reference point in the first and second images and matching the marker on the iris of the first image and the marker on the iris of the second image of the eye; estimating a torsional angular displacement between the markers in the first image and the second image by fitting the estimated torsional rotation with an iterative weighted function to correct for sinusoidal distortions; and centering and torsionally aligning a laser treatment with the second image of the eye. 41. A method of performing laser eye surgery, the method comprising: measuring a wavefront measurement of the eye; obtaining a first image of the eye during the measuring of the wavefront measurement; generating a laser treatment for the eye based on the wavefront measurement; registering a second image of an eye under an optical axis of a laser beam with the first image by dividing the image into a circumference series of sectors and matching a plurality of markers in the first image, each of the plurality of markers being disposed in an associated sector so that the markers are circumferentially distributed, with corresponding markers in the second image; centering the laser treatment with the eye under the optical axis of the laser beam; monitoring a position and torsional orientation of the eye relative to the laser beam during the laser treatment using a series of tracking images by tracking a position and orientation of a subset of the markers relative to a common reference point, wherein the torsional orientation monitoring between tracking images is faster than the registering of the second image with the first image; and adjusting a delivery of the laser treatment to compensate for changes of the position and torsional orientation of the eye.