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NTIS 바로가기The journal of microbiology, v.45 no.1, 2007년, pp.58 - 63
Sau Keya (Department of Mathematics, Jadavpur University) , Gupta Sanjib Kumar (Bioinformatics Centre) , Sau Subrata (Department of Biochemistry, Bose Institute) , Mandal Subhas Chandra (Department of Mathematics, Jadavpur University) , Ghosh Tapash Chandra (Bioinformatics Centre)
In this study, the relative synonymous codon and amino acid usage biases of the broad-host range phage, KVP40, were investigated in an attempt to understand the structure and function of its proteins/protein-coding genes, as well as the role of its tRNAs. Synonymous codons in KVP40 were determined t...
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Banerjee, T., S. Basak, S.K. Gupta, T.C. Ghosh. 2004. Evolutionary forces in shaping the codon and amino acid usages in Blochmannia floridanus. J. Biomol. Struct. Dyn. 22, 13-23
Banerjee, T., S.K. Gupta, and T.C. Ghosh. 2005. Towards a resolution on the inherent methodological weakness of the 'effective number of codons used by a gene'. Biochem. Biophys. Res. Commun. 330, 1015-1018
Basak, S.K., T. Banerjee, S.K. Gupta, and T.C. Ghosh. 2004. Investigation on the causes of codon and amino acid usages variation between thermophilic Aquifex aeolicus and mesophilic Bacillus subtilis. J. Biomol. Struct. Dynamics. 22, 205-214
D'Onofrio, G., T.C. Ghosh, and G. Bernardi. 2002. The base composition of the genes is correlated with the secondary structures of the encoded proteins. Gene 300, 179-187
Garat, B. and H. Musto. 2000 Trends of Amino acids usage in the proteins from the unicellular Parasite Giardia Lamblia. Biochem. Biophys. Res. Commun. 279, 996-1000
Gu, W., T. Zhou, J. Ma, X. Sun, and Z. Lu. 2004. Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales. Virus Res. 101, 155-161
Gupta, S.K., S. Majumdar, T.K. Bhattacharya, and T.C. Ghosh. 2002. Studies on the relationships between the synonymous codon usage and protein secondary structural units. Biochem. Biophys. Res. Commun. 269, 692-696
Gupta, S.K. and T.C. Ghosh. 2001. Gene expressivity is the main factor in dictating the codon usage variation among the genes in Pseudomonas aeruginosa. Gene 273, 63-70
Ikemura, T. 1985. Codon usage and tRNA content in unicellular and multicellular organisms. Mol. Biol. Evol. 2, 13-34
Jenkins, G.M. and E.C. Holmes. 2003. The extent of codon usage bias in human RNA viruses and its evolutionary origin. Virus Res. 92, 1-7
Kanaya, S., Y. Yamada, M. Kinouchi, Y. Kudo, and T. Ikemura. 2001. Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis. J. Mol. Evol. 53, 290-298
Kunisawa, T. 1992. Synonymous codon preferences in bacteriophage T4: a distinctive use of transfer RNAs from T4 and from its host Escherichia coli. J. Theor. Biol. 159, 287-298
Kunisawa, T., S. Kanaya, and E. Kutter. 1998. Comparison of synonymous codon distribution patterns of bacteriophage and host genomes. DNA Res. 5, 319-326
Krylov, V., E. Pleteneva, M. Bourkaltseva, O. Shaburova, G. Volckaert, N. Sykilinda, L. Kurochkina, and V. Mesyanzhinov. 2003. Myoviridae bacteriophages of Pseudomonas aeruginosa: a long and complex evolutionary pathway. Res. Microbiol. 154, 269-275
Levine, D.B. and B. Whitemore. 2000. Codon usage in nucleopolyhedroviruses. J. Gen. Virol. 81, 2313-2325
Lobry, J.R. and C. Gautier. 1994. Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes. Nucleic Acids Res. 22, 3174-3180
Lynn, D.J., G.A. Singer, and D.A. Hickey. 2002. Synonymous codon usage is subject to selection in thermophilic bacteria. Nucleic Acids Res. 30, 4272-4277
Makino, K., K. Oshima, K. Kurokawa, K. Yokoyama, T. Uda, K. Tagomori, Y. Iijima, M. Najima, M. Nakano, A. Yamashita, Y. Kubota, S. Kimura, T. Yasunaga, T. Honda, H. Shinagawa, M. Hattori, and T. Iida, 2003. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae. Lancet 361, 743-749
Matsuzaki, S., S. Tanaka, T. Koga, and T. Kawata. 1992. A broadhost- range vibriophage, KVP40, isolated from sea water. Microbiol. Immunol. 36, 93-97
Mclnerney, J.O. 1998. Replicational and transcriptional selection on codon usage in Borrelia burgdorferi. Proc. Natl. Acad. Sci. USA 95, 10698-10703
Miller, E.S., J.F. Heidelberg, J.A. Eisen, W.C. Nelson, A.S. Durkin, A. Ciecko, T.V. Feldblyum, O. White, I.T. Paulsen, W.C. Nierman, J. Lee, B. Szczypinski, and C.M. Fraser. 2003. Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage. J. Bacteriol. 185, 5220-5233
Naya, H., A. Zavala, H. Romero, H. Rodriguez-Maseda, and H. Musto. 2004. Correspondence analysis of amino acid usage within the family Bacillaceae. Biochem. Biophys. Res. Commun. 325, 1252-1257
Oresisc, M. and D. Shalloway. 1998. Specific correlations between relative synonymous codon usage and protein secondary structure. J. Mol. Biol. 281. 31-48
Romero, H., A. Zavala, and H. Musto. 2000. Compositional pressure and translational selection determine codon usage in the extremely GC- poor unicellular eukaryote Entamoeba histolytica. Nucleic Acids Res. 28, 2084-2090
Sahu, K., S.K. Gupta, S. Sau, and T.C. Ghosh. 2004. Synonymous Codon Usage Analysis of Mycobacteriophage Bxz1 and its plating bacteria M. smegmatis: identification of the Highly and Lowly Expressed Genes of Bxz1 and the possible function of its tRNA species. J. Biochem. Mol. Biol. 37, 487-492
Sahu, K., S.K. Gupta, S. Sau, and T.C. Ghosh. 2005. Comparative analysis of the base composition and codon usages in fourteen mycobacteriophage genomes. J. Biomol. Struct. Dyn. 23, 63-71
Sau, K., S. Sau, S.C. Mandal, and T.C. Ghosh. 2005. Factors influencing the synonymous codon and amino acid usage bias in an AT-rich P. aeruginosa phage PhiKZ. Acta. Biochim. Biophys. Sin. (Shanghai) 37, 625-633
Sharp, P.M. and W.H. Li. 1987. The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15, 1281-1295
Sharp, P.M. and E. Cowe. 1991. Synonymous codon usage in Saccharomyces cerevisiae. Yeast 7, 657-678
Wright, F. 1990. The 'effective number of codons' used in a gene. Gene 87, 23-29
Zavala, A., H. Naya, H. Romero, and H. Musto. 2002. Trends in codon and amino acid usage in Thermotoga maritima. J. Mol. Evol. 54, 563-568
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