$\require{mediawiki-texvc}$

연합인증

연합인증 가입 기관의 연구자들은 소속기관의 인증정보(ID와 암호)를 이용해 다른 대학, 연구기관, 서비스 공급자의 다양한 온라인 자원과 연구 데이터를 이용할 수 있습니다.

이는 여행자가 자국에서 발행 받은 여권으로 세계 각국을 자유롭게 여행할 수 있는 것과 같습니다.

연합인증으로 이용이 가능한 서비스는 NTIS, DataON, Edison, Kafe, Webinar 등이 있습니다.

한번의 인증절차만으로 연합인증 가입 서비스에 추가 로그인 없이 이용이 가능합니다.

다만, 연합인증을 위해서는 최초 1회만 인증 절차가 필요합니다. (회원이 아닐 경우 회원 가입이 필요합니다.)

연합인증 절차는 다음과 같습니다.

최초이용시에는
ScienceON에 로그인 → 연합인증 서비스 접속 → 로그인 (본인 확인 또는 회원가입) → 서비스 이용

그 이후에는
ScienceON 로그인 → 연합인증 서비스 접속 → 서비스 이용

연합인증을 활용하시면 KISTI가 제공하는 다양한 서비스를 편리하게 이용하실 수 있습니다.

Molecular Characterization of a Nuclease Gene of Chlorella Virus SS-2 원문보기

The plant pathology journal, v.25 no.1, 2009년, pp.47 - 53  

Park, Yun-Jung (Department of Microbiology, Pukyong National University) ,  Jung, Sang-Eun (Department of Microbiology, Pukyong National University) ,  Choi, Tae-Jin (Department of Microbiology, Pukyong National University)

Abstract AI-Helper 아이콘AI-Helper

Sequence analysis of the Chlorella virus SS-2 revealed one putative nuclease gene that is 807 bp long and encodes a 31kDa protein. Multiple sequence alignment analysis reveals the presence of highly conserved PD-(D/E)XK residues in the encoded protein. The gene cloned into an expression vector was e...

주제어

AI 본문요약
AI-Helper 아이콘 AI-Helper

* AI 자동 식별 결과로 적합하지 않은 문장이 있을 수 있으니, 이용에 유의하시기 바랍니다.

제안 방법

  • Houston- 1, CAF27185; Ectocarpus siliculosus virus EsV-1-64, AAK14487; Feldmannia irregularis virus FirrV-l-B43, AAR26918; Acanthamoeba polyphaga mimivirus, AAV50623; 8 coli APEC, 01ABJ00523; Bacteriophage VT2-Sa, BAA84296; and Phage BP-4795, CAD88815. A sequence similarity search was performed 냐sing the BLAST program of the National Center for Biotechnology Information (NCBI), and multiple protein sequence alignment was conducted using the CLUS1ALW program (http://www. ebi.ac.uk/clustalw).
  • BioRad, USA). All experiments were repeated three times, and the mean values were used for data analysis.
  • However, no functional experiments regarding this protein have been performed. In this paper, we amplified this putative exonuclease gene through PCR, cloned and expressed it in Escherichia coll as a recombinant protein, and tested its activities using various DNA substrates.
  • In this study, we expressed a chorella virus SS-2 nuclease in E. coil and tested its activity using various DNA substrates. It is known tliat each individual nuclease displays a preference for specific substrates and sites.
  • To find the optimal conditions for SS-2 nuclease, temperatures, pH concentration, and different divalent ions were tested. SS-2 nuclease displayed stable activity at a wide range of temperatures, between 10-50℃ (Fig.
  • Most expressed protein was found in the insoluble cell pellet. To increase the solubility of the recombinant protein, changes of culture conditions, bacterial host strain, concentrations of IPTQ incubation temperatures, and induction times were used (data not shown). Although the majority of the SS-2 nuclease was still produced in an insoluble form, coexpression of SS-2 nuclease with molecular chaperone protein, using the chaperone-containing expression host pKJE7 cells, appeared to enhance the soluble expression.
본문요약 정보가 도움이 되었나요?

참고문헌 (32)

  1. Agarkova, I. V., Dunigan, D. D. and Van Etten, J. L. 2006. Virionassociated restriction endonucleases of chloroviruses. J Viral. 80:8114-8123 

  2. Anderson, J. E. 1993. Restriction endonucleases and modification methy1ases. Curr. Opin. Struct. BioI. 3:24-30 

  3. Bujnicki, J. M. and Rychlewski, L. 2001. The herpesvirus alkaline exonuclease belongs to the restriction endonuclease PO-(DIE)XK superfamily: insight from molecular modeling and phylogenetic analysis. Virus Genes 22:219-230 

  4. Burbank, D. E., Shields, S. L., Schuster, A. M. and Van Etten, J. L. 1990. 5-Azacytidine resistant mutants of ChI orella virus IL-3A. Virology 176:311-315 

  5. Carter, D. and Radding, C. 1971. The role of exonuclease and beta protein of phage lambda in genetic recombination. II. substrate spcciticity and the mode of action of lambda exonuclease. J. Biol. Chem. 246:2502-2512 

  6. Cheng. Y-C., Chen, J.-Y, Hoffinann, P. J. and Glaser, R. 1980. Studies on the activity of DNase associated with the replication of the Epstein-Barr virus. Virology 100:334-338 

  7. Cho, H.-H., Park, H.-H., Kim, J.-O. and Choi, T.-J. 2002. Isolation and characterization of Chlorella viruses from freshwater sources in Korea. Mol. Cells 14:168-176 

  8. Doetsch, P. W. and Cunningham, R. P. 1990. The enzymology of apurinic/apyrimidinic endonucleases. Mutat. Res. 236: 173-201 

  9. Dunigan, D. D., Fitzgerald, L. A. and Van Etten, J. L. 2006. Phycodnaviruses: a peek at genetic diversity. Virus Res. 117: 119-132 

  10. Fitzgerald, L. A .. Graves, M. V., Li, X., Feldblyum, T., Hartigan, J. and Van Etten, J. L. 2007. Sequence and annotation of the 3l4-kb MT325 and the 321-kb FR483 viruses that infect Chlorella Pbi. Virology 358:459-471 

  11. Kang, M., Dunigan, D. D. and Van Etten, J. L. 2005. Chlorovirus: a genus of phycodnaviridae that infects certain chlorella-like green algae. Mol. Plant Pathol. 6:213-224 

  12. Knizewski, L. Kinch, L. Grishin, N. Rychlewski, L. and Ginalski, K. 2006. Human hcrpcsvirus I UL24 gcne encodes a potential PD-(D/E)XK endonuclease. J. Virol. 80:2575-2577 

  13. Kovall, R. A. and Matthews, B. W. 1999. Type II restriction endonucleases: structural, functional and evolutionary relationships. Curr. Opin. Chem. BioI. 3:578-583 

  14. Landstein, D., Burband, D. E., Nietfeldt, J. W. and Van Etten, J. L. 1995. Large deletions in antigenic variants of the Chiarella vims PBeY-I. Virology 214:413-420 

  15. Li, L. and Rohrmann, G. F. 2000. Characterization of a baculovirus alkaline nucleasc. J. Viral. 74:6401-6407 

  16. Li, Y, Lu, Z., Sun, L., Ropp, S., Kutish, G. E, Rock, D. L. and Van Etten, J. L. 1997. Analysis of 74 kb of DNA located at the right end ofthe 330-kb chlorella virus PBCV-I genome. Virology 237:360-377 

  17. Liu, M.-T., Hu, H.-P., Hsu, T.-Y and Chen, J.-Y 2003. Sitedirected mutagenesis in a conserved motif of Epstein-Barr virus DNase that is homologous to the catalytic centre of type II restriction cndonucleascs . .J Gen. Virol. 84:677-686 

  18. Murzin, A. G, Brenner, S. E., Hubbard, T. and Chothia, C. 1995. SCOP: a stmctural classification of proteins database for the investigation of sequences and structures. J. Mol. Bioi. 247:536-540 

  19. Nishida, K., Kimura, Y, Kawasaki, T., Fujie, M. and Yamada, T. 1999. Genetic variation of chlorella viruses: variable regions localized on the CVK2 genomic DNA. Virology 255:376-384 

  20. Plchova, H., Hartung, E and Puchta, H. 2003. Biochemical characterization of an exonuclease from Arabidopsis tha/tana reveals similarities to the DNA exonuclease of the human werner syndrome protein. J. BioI. Chem. 278:44128-44138 

  21. Ponchon, L., Boulanger, P., Labesse, G. and Letellier, L. 2006. The endonuclease domain of bacteriophage termmases belong to the resolvase/integrase/ribonuclease H superfamily. J Bioi. Chem. 281 :5829-5836 

  22. Sam brook, J. and Russell, D. W. 2001. Molecular cloning; A laboratory Manual, 3ed ed., CSH Laboratory Press, Cold Spring Harbor, NY 

  23. Selent, U., Ruter, T., Kohler, E., Liedtke, M., Thielking, Y, Alves, J. Oelgeschlager, T. Wolfes, H., Peters, F. and Pingoud, A. 1992. A site-directed mutagenesis study to identifY amino acid residues involved in the catalytic function of the restriction endonuclease EcoR Y. Biochemistry 31 :4808-4815 

  24. Shen, J.-C. and Loeb, L. A. 2000. Werner syndrome exonuclease catalyzes structure-dependent degradation of DNA. Nucleic Acids Res. 28:3260-3268 

  25. Van Etten, J. L. and Meints, R. H. 1999. Giant viruses infecting algae. Annu. Rev. Microbial. 53:447-494 

  26. Van Etten, J. L., Burbank, D. E., Xia, Y and Meints, R. H. 1983. Growth cycle of a virus, PBCV-I, that infects chlorella-like algae. Virology 126:117-125 

  27. Weller, S. K., Seghatoleslami, R. M., Shao, L., Rowse, D. and Carmichael. E. P. 1990. The herpes simplex virus type I alkaline nuclease is not essential for viral DNA synthesis: isolation and characterization of a lacZ insertion mutant. J. Gen. Viral. 71 :2941-2952 

  28. Wolfes, B., Alves, J., Fliess, A., Geiger, R. and Pingoud, A. 1986. Site-directed mutagenesis experiments suggest that Glu 111, Glu 144 and Arg 145 are essential far endonucleolytic activity of EcoR I. Nucleic Acids Res. 14:9063-9080 

  29. Xia, Y. and Van Etten, J. L. 1986. DNA methyltransferase induced by PBCY-I virus infection of a chlorella-Iike green alga. Mol. Cell. Biol. 6:1440-1445 

  30. Xia, Y, Burbank, D. E., Uher, L., Rabussay, D. and Van Etten, J. L. 1986. Restriction endonuclease activity induced by PBCVJ virus in fection of a chI orella-like green alga. Mol. Cell. Bioi. 6: 1430-1439 

  31. Zhang, Y., Nelson, M., Nietfeldt, J., Xia, Y, Burbank, D. E., Ropp, S. and Van Etten, J. L. 1998. Chi orella virus NY-2A encodes at least twelve DNA endonuclease/methyltransferase genes. Virology 240:366-375 

  32. Zhang, Y, Strasser, P., Grabherr, R. and Van Etten, J. L. 1994. Hairpin loop structure at the termini of the chlorella virus PBCV-l genome. Virology 202: 1079-1082 

저자의 다른 논문 :

LOADING...

관련 콘텐츠

오픈액세스(OA) 유형

BRONZE

출판사/학술단체 등이 한시적으로 특별한 프로모션 또는 일정기간 경과 후 접근을 허용하여, 출판사/학술단체 등의 사이트에서 이용 가능한 논문

이 논문과 함께 이용한 콘텐츠

섹션별 컨텐츠 바로가기

AI-Helper ※ AI-Helper는 오픈소스 모델을 사용합니다.

AI-Helper 아이콘
AI-Helper
안녕하세요, AI-Helper입니다. 좌측 "선택된 텍스트"에서 텍스트를 선택하여 요약, 번역, 용어설명을 실행하세요.
※ AI-Helper는 부적절한 답변을 할 수 있습니다.

선택된 텍스트

맨위로