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NTIS 바로가기생명과학회지 = Journal of life science, v.29 no.1 = no.225, 2019년, pp.1 - 8
박원철 (농촌진흥청 국립축산과학원 동물유전체과) , 크리스나무티 스리칸스 (농촌진흥청 국립축산과학원 동물유전체과) , 박종은 (농촌진흥청 국립축산과학원 동물유전체과) , 신동현 (전북대학교 동물공학과) , 고해수 (농촌진흥청 국립축산과학원 동물유전체과) , 임다정 (농촌진흥청 국립축산과학원 동물유전체과) , 조인철 (농촌진흥청 국립축산과학원 동물유전체과)
In Hanwoo cattle (Korean native cattle), there is a scarcity of comparative analysis papers using highdepth sequencing and haplotype phasing, particularly a comparative analysis of the Truseq Synthetic Long-Read Haplotyping sequencing platform serviced by Illumina (TSLRH) versus the Chromium Genome ...
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Armstrong, E. E., Taylor, R. W., Prost, S., Blinston, P., van der Meer, E., Madzikanda, H., Mufute, O., Mandisodza, R., Steulpnagel, J. and Sillero-Zubiri, C. 2017. Entering the era of conservation genomics: Cost-effective assembly of the African wild dog genome using linked long reads. bioRxiv 195180.
Danecek, P., Auton, A., Abecasis, G., Albers, C. A., Banks, E., DePristo, M. A., Handsaker, R. E., Lunter, G., Marth, G. T. and Sherry, S. T. 2011. The variant call format and VCFtools. Bioinformatics 27, 2156.
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Kim, D., Kim, Y., Chung, Y., Yoo, Y. and Park, B. 1993. A study on the consumer's attitude to beef-(1)-Consumer's purchasing pattern and preference. RDA Journal of Agricultural Science (Korea Republic).
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Kuleshov, V., Xie, D., Chen, R., Pushkarev, D., Ma, Z., Blauwkamp, T., Kertesz, M. and Snyder, M. 2014. Whole-genome haplotyping using long reads and statistical methods. Nat. Biotechnol. 32, 261.
Lee, K. T., Chung, W. H., Lee, S. Y., Choi, J. W., Kim, J., Lim, D., Lee, S., Jang, G. W., Kim, B. and Choy, Y. H. 2013. Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity. BMC Genomics 14, 519.
Lee, S. H., Choi, B. H., Lim, D., Gondro, C., Cho, Y. M., Dang, C. G., Sharma, A., Jang, G. W., Lee, K. T. and Yoon, D. 2013. Genome-wide association study identifies major loci for carcass weight on BTA14 in Hanwoo (Korean cattle). PLoS One 8, e74677.
Mostovoy, Y., Levy-Sakin, M., Lam, J., Lam, E. T., Hastie, A. R., Marks, P., Lee, J., Chu, C., Lin, C. and Dzakula, Z. 2016. A hybrid approach for de novo human genome sequence assembly and phasing. Nat. Methods 13, 587.
Nielsen, R., Paul, J. S., Albrechtsen, A. and Song, Y. S. 2011. Genotype and SNP calling from next-generation sequencing data. Nat. Rev. Genet. 12, 443.
Romiguier, J., Ranwez, V., Douzery, E. J. and Galtier, N. 2010. Contrasting GC-content dynamics across 33 mammalian genomes: relationship with life-history traits and chromosome sizes. Genome Res. 20, 1001.
Snyder, M. W., Adey, A., Kitzman, J. O. and Shendure, J. 2015. Haplotype-resolved genome sequencing: experimental methods and applications. Nat. Rev. Genet 16, 344.
Tewhey, R., Bansal, V., Torkamani, A., Topol, E. J. and Schork, N. J. 2011. The importance of phase information for human genomics. Nat. Rev. Genet 12, 215.
Xia, L. C., Bell, J. M., Wood-Bouwens, C., Chen, J. J., Zhang, N. R. and Ji, H. P. 2017. Identification of large rearrangements in cancer genomes with barcode linked reads. Nucleic Acids Res. 46, e19.
Zheng, G. X., Lau, B. T., Schnall-Levin, M., Jarosz, M., Bell, J. M., Hindson, C. M., Kyriazopoulou-Panagiotopoulou, S., Masquelier, D. A., Merrill, L. and Terry, J. M. 2016. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing. Nat. Biotechnol. 34, 303.
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