$\require{mediawiki-texvc}$

연합인증

연합인증 가입 기관의 연구자들은 소속기관의 인증정보(ID와 암호)를 이용해 다른 대학, 연구기관, 서비스 공급자의 다양한 온라인 자원과 연구 데이터를 이용할 수 있습니다.

이는 여행자가 자국에서 발행 받은 여권으로 세계 각국을 자유롭게 여행할 수 있는 것과 같습니다.

연합인증으로 이용이 가능한 서비스는 NTIS, DataON, Edison, Kafe, Webinar 등이 있습니다.

한번의 인증절차만으로 연합인증 가입 서비스에 추가 로그인 없이 이용이 가능합니다.

다만, 연합인증을 위해서는 최초 1회만 인증 절차가 필요합니다. (회원이 아닐 경우 회원 가입이 필요합니다.)

연합인증 절차는 다음과 같습니다.

최초이용시에는
ScienceON에 로그인 → 연합인증 서비스 접속 → 로그인 (본인 확인 또는 회원가입) → 서비스 이용

그 이후에는
ScienceON 로그인 → 연합인증 서비스 접속 → 서비스 이용

연합인증을 활용하시면 KISTI가 제공하는 다양한 서비스를 편리하게 이용하실 수 있습니다.

[해외논문] CRISPR interference‐mediated gene regulation in Pseudomonas putida KT2440 원문보기

Microbial biotechnology, v.13 no.1, 2020년, pp.210 - 221  

Kim, Seong Keun (Synthetic Biology and Bioengineering Research Center Korea Research Institute of Bioscience and Biotechnology (KRIBB) Daejeon 34141 Korea) ,  Yoon, Paul K. (Synthetic Biology and Bioengineering Research Center Korea Research Institute of Bioscience and Biotechnology (KRIBB) Daejeon 34141 Korea) ,  Kim, Soo‐Jung (Synthetic Biology and Bioengineering Research Center Korea Research Institute of Bioscience and Biotechnology (KRIBB) Daejeon 34141 Korea) ,  Woo, Seung‐Gyun (Synthetic Biology and Bioengineering Research Center Korea Research Institute of Bioscience and Biotechnology (KRIBB) Daejeon 34141 Korea) ,  Rha, Eugene (Synthetic Biology and Bioengineering Research Center Korea Research Institute of Bioscience and Biotechnology (KRIBB) Daejeon 34141 Korea) ,  Lee, Hyewon (Synthetic Biology and Bioengineering Research Center Korea Research Institute of Bioscience and Biotechnology (KRIBB) Daejeon 34141 Korea) ,  Yeom, Soo‐Jin (Synthetic Biology and Bioengineering Research Center Korea Research Institute of Bioscience and Biotechnology (KRIBB) Daejeon 34141 Korea) ,  Kim, Haseong (Synthetic Biology an) ,  Lee, Dae‐Hee ,  Lee, Seung‐Goo

Abstract AI-Helper 아이콘AI-Helper

SummaryTargeted gene regulation is indispensable for reprogramming a cellular network to modulate a microbial phenotype. Here, we adopted the type II CRISPR interference (CRISPRi) system for simple and efficient regulation of target genes in Pseudomonas putida KT2440. A single CRISPRi plasmid was ge...

참고문헌 (40)

  1. Abril, M A, Michan, C, Timmis, K N, Ramos, J L. Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway. Journal of bacteriology, vol.171, no.12, 6782-6790.

  2. Bikard, David, Jiang, Wenyan, Samai, Poulami, Hochschild, Ann, Zhang, Feng, Marraffini, Luciano A.. Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic acids research, vol.41, no.15, 7429-7437.

  3. Bondy-Denomy, Joseph, Garcia, Bianca, Strum, Scott, Du, Mingjian, Rollins, MaryClare F., Hidalgo-Reyes, Yurima, Wiedenheft, Blake, Maxwell, Karen L., Davidson, Alan R.. Multiple mechanisms for CRISPR–Cas inhibition by anti-CRISPR proteins. Nature, vol.526, no.7571, 136-139.

  4. Calero, Patricia, Jensen, Sheila I., Nielsen, Alex T.. Broad-Host-Range ProUSER Vectors Enable Fast Characterization of Inducible Promoters and Optimization of p-Coumaric Acid Production in Pseudomonas putida KT2440. ACS Synthetic biology, vol.5, no.7, 741-753.

  5. Cho, Suhyung, Shin, Jongoh, Cho, Byung-Kwan. Applications of CRISPR/Cas System to Bacterial Metabolic Engineering. International journal of molecular sciences, vol.19, no.4, 1089-.

  6. Cook, Taylor B, Rand, Jacqueline M, Nurani, Wasti, Courtney, Dylan K, Liu, Sophia A, Pfleger, Brian F. Genetic tools for reliable gene expression and recombineering in Pseudomonas putida. Journal of industrial microbiology & biotechnology, vol.45, no.7, 517-527.

  7. Escapa, I. F., del Cerro, C., García, J. L., Prieto, M. A.. The role of GlpR repressor in Pseudomonas putida KT2440 growth and PHA production from glycerol. Environmental microbiology, vol.15, no.1, 93-110.

  8. Giacalone, Matthew J., Gentile, Angela M., Lovitt, Brian T., Berkley, Neil L., Gunderson, Carl W., Surber, Mark W.. Toxic Protein Expression in Escherichia Coli Using a Rhamnose-Based Tightly Regulated and Tunable Promoter System. Biotechniques, vol.40, no.3, 355-364.

  9. Gilbert, Luke A., Larson, Matthew H., Morsut, L., Liu, Z., Brar, Gloria A., Torres, Sandra E., Stern-Ginossar, N., Brandman, O., Whitehead, Evan H., Doudna, Jennifer A., Lim, Wendell A., Weissman, Jonathan S., Qi, Lei S.. CRISPR-Mediated Modular RNA-Guided Regulation of Transcription in Eukaryotes. Cell, vol.154, no.2, 442-451.

  10. Han, Gui Hwan, Kim, Seong Keun, Yoon, Paul Kyung-Seok, Kang, Younghwan, Kim, Byoung Su, Fu, Yaoyao, Sung, Bong Hyun, Jung, Heung Chae, Lee, Dae-Hee, Kim, Seon-Won, Lee, Seung-Goo. Fermentative production and direct extraction of (−)-α-bisabolol in metabolically engineered Escherichia coli. Microbial cell factories, vol.15, 185-.

  11. Hintermayer, Sarah Beate, Weuster‐Botz, Dirk. Experimental validation of in silico estimated biomass yields of Pseudomonas putida KT2440. Biotechnology journal, vol.12, no.6, 1600720-.

  12. Hjelm, Anna, Karyolaimos, Alexandros, Zhang, Zhe, Rujas, Edurne, Vikström, David, Slotboom, Dirk Jan, de Gier, Jan-Willem. Tailoring Escherichia coli for the l-Rhamnose PBAD Promoter-Based Production of Membrane and Secretory Proteins. ACS Synthetic biology, vol.6, no.6, 985-994.

  13. Jeske, Marcel, Altenbuchner, Josef. The Escherichia coli rhamnose promoter rhaP BAD is in Pseudomonas putida KT2440 independent of Crp-cAMP activation. Applied microbiology and biotechnology, vol.85, no.6, 1923-1933.

  14. Kim, Seong Keun, Han, Gui Hwan, Seong, Wonjae, Kim, Haseong, Kim, Seon-Won, Lee, Dae-Hee, Lee, Seung-Goo. CRISPR interference-guided balancing of a biosynthetic mevalonate pathway increases terpenoid production. Metabolic engineering, vol.38, 228-240.

  15. Kim, Seong Keun, Kim, Haseong, Ahn, Woo-Chan, Park, Kwang-Hyun, Woo, Eui-Jeon, Lee, Dae-Hee, Lee, Seung-Goo. Efficient Transcriptional Gene Repression by Type V-A CRISPR-Cpf1 from Eubacterium eligens. ACS Synthetic biology, vol.6, no.7, 1273-1282.

  16. Komor, Alexis C., Badran, Ahmed H., Liu, David R.. CRISPR-Based Technologies for the Manipulation of Eukaryotic Genomes. Cell, vol.168, no.1, 20-36.

  17. Kuepper, Jannis, Dickler, Jasmin, Biggel, Michael, Behnken, Swantje, Jäger, Gernot, Wierckx, Nick, Blank, Lars M.. Metabolic Engineering of Pseudomonas putida KT2440 to Produce Anthranilate from Glucose. Frontiers in microbiology, vol.6, 1310-.

  18. 10.1128/MMBR.53.4.491-516.1989 

  19. Larson, Matthew H, Gilbert, Luke A, Wang, Xiaowo, Lim, Wendell A, Weissman, Jonathan S, Qi, Lei S. CRISPR interference (CRISPRi) for sequence-specific control of gene expression. Nature protocols, vol.8, no.11, 2180-2196.

  20. Lee, Kyung-Ho, Min, Seung-Eui, Kim, Haseong, Lee, Seung-Goo, Kim, Dong-Myung. A molecular nanodevice for targeted degradation of mRNA during protein synthesis. Scientific reports, vol.6, 20733-.

  21. Liao, P., Hemmerlin, A., Bach, T.J., Chye, M.L.. The potential of the mevalonate pathway for enhanced isoprenoid production. Biotechnology advances, vol.34, no.5, 697-713.

  22. Loeschcke, Anita, Thies, Stephan. Pseudomonas putida —a versatile host for the production of natural products. Applied microbiology and biotechnology, vol.99, no.15, 6197-6214.

  23. Luo, Xi, Yang, Yunwen, Ling, Wen, Zhuang, Hao, Li, Qin, Shang, Guangdong, Calendar, Richard. Pseudomonas putidaKT2440 markerless gene deletion using a combination of λ Red recombineering and Cre/loxPsite-specific recombination. FEMS microbiology letters, vol.363, no.4, fnw014-.

  24. Ma, X., Zhu, Q., Chen, Y., Liu, Y.G.. CRISPR/Cas9 Platforms for Genome Editing in Plants: Developments and Applications. Molecular plant = 分子植物 英文版, vol.9, no.7, 961-974.

  25. Martínez‐García, Esteban, de Lorenzo, Víctor. Engineering multiple genomic deletions in Gram‐negative bacteria: analysis of the multi‐resistant antibiotic profile of Pseudomonas putida KT2440. Environmental microbiology, vol.13, no.10, 2702-2716.

  26. Nikel, P.I., de Lorenzo, V.. Robustness of Pseudomonas putida KT2440 as a host for ethanol biosynthesis. New biotechnology, vol.31, no.6, 562-571.

  27. Nikel, Pablo I., de Lorenzo, Víctor. Pseudomonas putida as a functional chassis for industrial biocatalysis: From native biochemistry to trans-metabolism. Metabolic engineering, vol.50, 142-155.

  28. Nikel, Pablo I., Romero-Campero, Francisco J., Zeidman, Joshua A., Goñi-Moreno, Ángel, de Lorenzo, Víctor. The Glycerol-Dependent Metabolic Persistence of Pseudomonas putida KT2440 Reflects the Regulatory Logic of the GlpR Repressor. mBio, vol.6, no.2, e00340-15-.

  29. Nikel, P.I., Chavarria, M., Danchin, A., de Lorenzo, V.. From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions. Current opinion in chemical biology, vol.34, 20-29.

  30. Nogales, Juan, Palsson, Bernhard Ø, Thiele, Ines. A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: i JN746 as a cell factory. BMC systems biology, vol.2, 79-79.

  31. Peters, Jason M., Colavin, Alexandre, Shi, Handuo, Czarny, Tomasz L., Larson, Matthew H., Wong, Spencer, Hawkins, John S., Lu, Candy H.S., Koo, Byoung-Mo, Marta, Elizabeth, Shiver, Anthony L., Whitehead, Evan H., Weissman, Jonathan S., Brown, Eric D., Qi, Lei S., Huang, Kerwyn Casey, Gross, Carol A.. A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria. Cell, vol.165, no.6, 1493-1506.

  32. Qi, Lei S., Larson, Matthew H., Gilbert, Luke A., Doudna, Jennifer A., Weissman, Jonathan S., Arkin, Adam P., Lim, Wendell A.. Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression. Cell, vol.152, no.5, 1173-1183.

  33. Silva-Rocha, Rafael, Martínez-García, Esteban, Calles, Belén, Chavarría, Max, Arce-Rodríguez, Alejandro, de las Heras, Aitor, Páez-Espino, A. David, Durante-Rodríguez, Gonzalo, Kim, Juhyun, Nikel, Pablo I., Platero, Raúl, de Lorenzo, Víctor. The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes. Nucleic acids research, vol.41, no.1, D666-D675.

  34. Sohn, Seung Bum, Kim, Tae Yong, Park, Jong Myoung, Lee, Sang Yup. In silico genome‐scale metabolic analysis of Pseudomonas putida KT2440 for polyhydroxyalkanoate synthesis, degradation of aromatics and anaerobic survival. Biotechnology journal, vol.5, no.7, 739-750.

  35. Sun, Jun, Wang, Qingzhuo, Jiang, Yu, Wen, Zhiqiang, Yang, Lirong, Wu, Jianping, Yang, Sheng. Genome editing and transcriptional repression in Pseudomonas putida KT2440 via the type II CRISPR system. Microbial cell factories, vol.17, 41-.

  36. Tan, Sue Zanne, Reisch, Christopher R., Prather, Kristala L. J.. A Robust CRISPR Interference Gene Repression System in Pseudomonas. Journal of bacteriology, vol.200, no.7, e00575-17-e00575-17.

  37. Wang, Hong-hui, Zhou, Xin-rong, Liu, Qian, Chen, Guo-Qiang. Biosynthesis of polyhydroxyalkanoate homopolymers by Pseudomonas putida. Applied microbiology and biotechnology, vol.89, no.5, 1497-1507.

  38. Wegerer, Angelika, Sun, Tianqi, Altenbuchner, Josef. Optimization of an E. coli L-rhamnose-inducible expression vector: test of various genetic module combinations. BMC biotechnology, vol.8, 2-2.

  39. Xiong, Mingyong, Schneiderman, Deborah K., Bates, Frank S., Hillmyer, Marc A., Zhang, Kechun. Scalable production of mechanically tunable block polymers from sugar. Proceedings of the National Academy of Sciences of the United States of America, vol.111, no.23, 8357-8362.

  40. Yu, Shiqin, Plan, Manuel R., Winter, Gal, Krömer, Jens O.. Metabolic Engineering of Pseudomonas putida KT2440 for the Production of para -Hydroxy Benzoic Acid. Frontiers in bioengineering and biotechnology, vol.4, 90-.

LOADING...

활용도 분석정보

상세보기
다운로드
내보내기

활용도 Top5 논문

해당 논문의 주제분야에서 활용도가 높은 상위 5개 콘텐츠를 보여줍니다.
더보기 버튼을 클릭하시면 더 많은 관련자료를 살펴볼 수 있습니다.

관련 콘텐츠

오픈액세스(OA) 유형

GOLD

오픈액세스 학술지에 출판된 논문

유발과제정보 저작권 관리 안내
섹션별 컨텐츠 바로가기

AI-Helper ※ AI-Helper는 오픈소스 모델을 사용합니다.

AI-Helper 아이콘
AI-Helper
안녕하세요, AI-Helper입니다. 좌측 "선택된 텍스트"에서 텍스트를 선택하여 요약, 번역, 용어설명을 실행하세요.
※ AI-Helper는 부적절한 답변을 할 수 있습니다.

선택된 텍스트

맨위로