참고문헌 (47)

1. Fernández-García, Laura, Blasco, Lucia, Lopez, Maria, Bou, German, García-Contreras, Rodolfo, Wood, Thomas, Tomas, María. Toxin-Antitoxin Systems in Clinical Pathogens. Toxins, vol.8, no.7, 227-.

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2. Gomez-Simmonds, Angela, Uhlemann, Anne-Catrin. Clinical Implications of Genomic Adaptation and Evolution of Carbapenem-Resistant Klebsiella pneumoniae. The Journal of infectious diseases : official publication of the Infectious Diseases Society of America, vol.215, no.1, S18-S27.

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3. Ogura, T, Hiraga, S. Mini-F plasmid genes that couple host cell division to plasmid proliferation.. Proceedings of the National Academy of Sciences of the United States of America, vol.80, no.15, 4784-4788.

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4. Gerdes, K, Rasmussen, P B, Molin, S. Unique type of plasmid maintenance function: postsegregational killing of plasmid-free cells.. Proceedings of the National Academy of Sciences of the United States of America, vol.83, no.10, 3116-3120.

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5. Hazan, Ronen, Sat, Boaz, Engelberg-Kulka, Hanna. Escherichia coli mazEF -Mediated Cell Death Is Triggered by Various Stressful Conditions. Journal of bacteriology, vol.186, no.11, 3663-3669.

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6. Sat, Boaz, Hazan, Ronen, Fisher, Tova, Khaner, Hanita, Glaser, Gad, Engelberg-Kulka, Hanna. Programmed Cell Death in Escherichia coli : Some Antibiotics Can Trigger mazEF Lethality. Journal of bacteriology, vol.183, no.6, 2041-2045.

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7. Wang, Xiaoxue, Wood, Thomas K.. Toxin-Antitoxin Systems Influence Biofilm and Persister Cell Formation and the General Stress Response. Applied and environmental microbiology, vol.77, no.16, 5577-5583.

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8. Dörr, Tobias, Vulić, Marin, Lewis, Kim. Ciprofloxacin Causes Persister Formation by Inducing the TisB toxin in Escherichia coli. PLoS biology, vol.8, no.2, e1000317-.

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9. Harms, Alexander, Brodersen, Ditlev Egeskov, Mitarai, Namiko, Gerdes, Kenn. Toxins, Targets, and Triggers: An Overview of Toxin-Antitoxin Biology. Molecular cell, vol.70, no.5, 768-784.

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10. Park, S.J., Son, W.S., Lee, B.J.. Structural overview of toxin-antitoxin systems in infectious bacteria: A target for developing antimicrobial agents. Biochimica et biophysica acta. Proteins and proteomics, vol.1834, no.6, 1155-1167.

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11. Kang, Sung-Min, Kim, Do-Hee, Jin, Chenglong, Lee, Bong-Jin. A Systematic Overview of Type II and III Toxin-Antitoxin Systems with a Focus on Druggability. Toxins, vol.10, no.12, 515-.

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12. Xie, Yingzhou, Wei, Yiqing, Shen, Yue, Li, Xiaobin, Zhou, Hao, Tai, Cui, Deng, Zixin, Ou, Hong-Yu. TADB 2.0: an updated database of bacterial type II toxin-antitoxin loci. Nucleic acids research, vol.46, no.d1, D749-D753.

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13. Burley, Stephen K, Berman, Helen M, Bhikadiya, Charmi, Bi, Chunxiao, Chen, Li, Di Costanzo, Luigi, Christie, Cole, Dalenberg, Ken, Duarte, Jose M, Dutta, Shuchismita, Feng, Zukang, Ghosh, Sutapa, Goodsell, David S, Green, Rachel K, Guranović, Vladimir, Guzenko, Dmytro, Hudson, Brian P, Kalro, Tara, Liang, Yuhe, Lowe, Robert, Namkoong, Harry, Peisach, Ezra, Periskova, Irina, Prlić, Andreas, Randle, Chris, Rose, Alexander, Rose, Peter, Sala, Raul, Sekharan, Monica, Shao, Chenghua, Tan, Lihua, Tao, Yi-Ping, Valasatava, Yana, Voigt, Maria, Westbrook, John, Woo, Jesse, Yang, Huanwang, Young, Jasmine, Zhuravleva, Marina, Zardecki, Christine. RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic acids research, vol.47, no.d1, D464-D474.

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14. Mattison, Kirsten, Wilbur, J.Scott, So, Magdalene, Brennan, Richard G.. Structure of FitAB from Neisseria gonorrhoeae Bound to DNA Reveals a Tetramer of Toxin-Antitoxin Heterodimers Containing Pin Domains and Ribbon-Helix-Helix Motifs. The Journal of biological chemistry, vol.281, no.49, 37942-37951.

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15. Dienemann, Christian, Bøggild, Andreas, Winther, Kristoffer S., Gerdes, Kenn, Brodersen, Ditlev E.. Crystal Structure of the VapBC Toxin–Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly. Journal of molecular biology, vol.414, no.5, 713-722.

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16. Maté, María J., Vincentelli, Renaud, Foos, Nicolas, Raoult, Didier, Cambillau, Christian, Ortiz-Lombardía, Miguel. Crystal structure of the DNA-bound VapBC2 antitoxin/toxin pair from Rickettsia felis. Nucleic acids research, vol.40, no.7, 3245-3258.

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17. Bendtsen, Kirstine L., Xu, Kehan, Luckmann, Majbritt, Winther, Kristoffer S., Shah, Shiraz A., Pedersen, Christian N. S., Brodersen, Ditlev E.. Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding. Nucleic acids research, vol.45, no.5, 2875-2886.

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18. Molinaro, Ashley L., Kashipathy, Maithri M., Lovell, Scott, Battaile, Kevin P., Coussens, Nathan P., Shen, Min, Daines, Dayle A.. Crystal Structure of VapBC-1 from Nontypeable Haemophilus influenzae and the Effect of PIN Domain Mutations on Survival during Infection. Journal of bacteriology, vol.201, no.12, e00026-19-e00026-19.

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19. Min, Andrew B., Miallau, Linda, Sawaya, Michael R., Habel, Jeff, Cascio, Duilio, Eisenberg, David. The crystal structure of the Rv0301‐Rv0300 VapBC‐3 toxin-antitoxin complex from M. tuberculosis reveals a Mg²⁺ ion in the active site and a putative RNA‐binding site. Protein science : a publication of the Protein Society, vol.21, no.11, 1754-1767.

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20. Miallau, Linda, Faller, Michael, Chiang, Janet, Arbing, Mark, Guo, Feng, Cascio, Duilio, Eisenberg, David. Structure and Proposed Activity of a Member of the VapBC Family of Toxin-Antitoxin Systems. The Journal of biological chemistry, vol.284, no.1, 276-283.

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21. Deep, Amar, Tiwari, Prabhakar, Agarwal, Sakshi, Kaundal, Soni, Kidwai, Saqib, Singh, Ramandeep, Thakur, Krishan G. Structural, functional and biological insights into the role of Mycobacterium tuberculosis VapBC11 toxin-antitoxin system: targeting a tRNase to tackle mycobacterial adaptation. Nucleic acids research, vol.46, no.21, 11639-11655.

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22. Das, Uddipan, Pogenberg, Vivian, Subhramanyam, Udaya Kumar Tiruttani, Wilmanns, Matthias, Gourinath, Samudrala, Srinivasan, Alagiri. Crystal structure of the VapBC-15 complex from Mycobacterium tuberculosis reveals a two-metal ion dependent PIN-domain ribonuclease and a variable mode of toxin–antitoxin assembly. Journal of structural biology, vol.188, no.3, 249-258.

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23. Kang, Sung-Min, Kim, Do-Hee, Lee, Ki-Young, Park, Sung Jean, Yoon, Hye-Jin, Lee, Sang Jae, Im, Hookang, Lee, Bong-Jin. Functional details of the Mycobacterium tuberculosis VapBC26 toxin-antitoxin system based on a structural study: insights into unique binding and antibiotic peptides. Nucleic acids research, vol.45, no.14, 8564-8580.

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24. Lee, In-Gyun, Lee, Sang Jae, Chae, Susanna, Lee, Ki-Young, Kim, Ji-Hun, Lee, Bong-Jin. Structural and functional studies of the Mycobacterium tuberculosis VapBC30 toxin-antitoxin system: implications for the design of novel antimicrobial peptides. Nucleic acids research, vol.43, no.15, 7624-7637.

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25. Kim, Do-Hee, Kang, Sung-Min, Park, Sung Jean, Jin, Chenglong, Yoon, Hye-Jin, Lee, Bong-Jin. Functional insights into the Streptococcus pneumoniae HicBA toxin-antitoxin system based on a structural study. Nucleic acids research, vol.46, no.12, 6371-6386.

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26. Williams, J.J., Hergenrother, P.J.. Artificial activation of toxin-antitoxin systems as an antibacterial strategy. Trends in microbiology, vol.20, no.6, 291-298.

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27. Równicki, Marcin, Pieńko, Tomasz, Czarnecki, Jakub, Kolanowska, Monika, Bartosik, Dariusz, Trylska, Joanna. Artificial Activation of Escherichia coli mazEF and hipBA Toxin–Antitoxin Systems by Antisense Peptide Nucleic Acids as an Antibacterial Strategy. Frontiers in microbiology, vol.9, 2870-.

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28. Buchan, Daniel W A, Jones, David T. The PSIPRED Protein Analysis Workbench: 20 years on. Nucleic acids research, vol.47, no.w1, W402-W407.

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29. Schreiter, Eric R., Drennan, Catherine L.. Ribbon–helix–helix transcription factors: variations on a theme. Nature reviews. Microbiology, vol.5, no.9, 710-720.

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30. McWilliam, Hamish, Li, Weizhong, Uludag, Mahmut, Squizzato, Silvano, Park, Young Mi, Buso, Nicola, Cowley, Andrew Peter, Lopez, Rodrigo. Analysis Tool Web Services from the EMBL-EBI. Nucleic acids research, vol.41, no.w1, W597-W600.

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31. Robert, Xavier, Gouet, Patrice. Deciphering key features in protein structures with the new ENDscript server. Nucleic acids research, vol.42, no.w1, W320-W324.

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32. Arcus, Vickery L., Rainey, Paul B., Turner, Susan J.. The PIN-domain toxin–antitoxin array in mycobacteria. Trends in microbiology, vol.13, no.8, 360-365.

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33. Arcus, V. L., McKenzie, J. L., Robson, J., Cook, G. M.. The PIN-domain ribonucleases and the prokaryotic VapBC toxin-antitoxin array. Protein engineering, design & selection : PEDS, vol.24, no.1, 33-40.

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34. Coles, Murray, Djuranovic, Sergej, Söding, Johannes, Frickey, Tancred, Koretke, Kristin, Truffault, Vincent, Martin, Jörg, Lupas, Andrei N.. AbrB-like Transcription Factors Assume a Swapped Hairpin Fold that Is Evolutionarily Related to Double-Psi β Barrels. Structure, vol.13, no.6, 919-928.

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35. Krissinel, Evgeny, Henrick, Kim. Inference of Macromolecular Assemblies from Crystalline State. Journal of molecular biology, vol.372, no.3, 774-797.

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36. Tina, K. G., Bhadra, R., Srinivasan, N.. PIC: Protein Interactions Calculator. Nucleic acids research, vol.35, no.2, W473-W476.

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37. Luong, Huy X., Kim, Do-Hee, Lee, Bong-Jin, Kim, Young-Woo. Effects of lysine-to-arginine substitution on antimicrobial activity of cationic stapled heptapeptides. Archives of pharmacal research : a publication of the Pharmaceutical Society of Korea, vol.41, no.11, 1092-1097.

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38. Laskowski, Roman A., Swindells, Mark B.. LigPlot+: Multiple Ligand–Protein Interaction Diagrams for Drug Discovery. Journal of chemical information and modeling, vol.51, no.10, 2778-2786.

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39. Kędzierska, Barbara, Lian, Lu-Yun, Hayes, Finbarr. Toxin–antitoxin regulation: bimodal interaction of YefM–YoeB with paired DNA palindromes exerts transcriptional autorepression. Nucleic acids research, vol.35, no.1, 325-339.

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40. Overgaard, Martin, Borch, Jonas, Jørgensen, Mikkel G., Gerdes, Kenn. Messenger RNA interferase RelE controls relBE transcription by conditional cooperativity. Molecular microbiology, vol.69, no.4, 841-857.

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42. Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Davis, Ian W., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Kapral, Gary J., Grosse-Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert, Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.. PHENIX : a comprehensive Python-based system for macromolecular structure solution. Acta crystallographica. Section D, Biological crystallography, vol.66, no.2, 213-221.

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43. Emsley, P., Lohkamp, B., Scott, W. G., Cowtan, K.. Features and development of Coot. Acta crystallographica. Section D, Biological crystallography, vol.66, no.4, 486-501.

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44. Murshudov, Garib N., Skubák, Pavol, Lebedev, Andrey A., Pannu, Navraj S., Steiner, Roberto A., Nicholls, Robert A., Winn, Martyn D., Long, Fei, Vagin, Alexei A.. REFMAC 5 for the refinement of macromolecular crystal structures. Acta crystallographica. Section D, Biological crystallography, vol.67, no.4, 355-367.

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45. Chen, Vincent B., Arendall III, W. Bryan, Headd, Jeffrey J., Keedy, Daniel A., Immormino, Robert M., Kapral, Gary J., Murray, Laura W., Richardson, Jane S., Richardson, David C.. MolProbity : all-atom structure validation for macromolecular crystallography. Acta crystallographica. Section D, Biological crystallography, vol.66, no.1, 12-21.

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