$\require{mediawiki-texvc}$

연합인증

연합인증 가입 기관의 연구자들은 소속기관의 인증정보(ID와 암호)를 이용해 다른 대학, 연구기관, 서비스 공급자의 다양한 온라인 자원과 연구 데이터를 이용할 수 있습니다.

이는 여행자가 자국에서 발행 받은 여권으로 세계 각국을 자유롭게 여행할 수 있는 것과 같습니다.

연합인증으로 이용이 가능한 서비스는 NTIS, DataON, Edison, Kafe, Webinar 등이 있습니다.

한번의 인증절차만으로 연합인증 가입 서비스에 추가 로그인 없이 이용이 가능합니다.

다만, 연합인증을 위해서는 최초 1회만 인증 절차가 필요합니다. (회원이 아닐 경우 회원 가입이 필요합니다.)

연합인증 절차는 다음과 같습니다.

최초이용시에는
ScienceON에 로그인 → 연합인증 서비스 접속 → 로그인 (본인 확인 또는 회원가입) → 서비스 이용

그 이후에는
ScienceON 로그인 → 연합인증 서비스 접속 → 서비스 이용

연합인증을 활용하시면 KISTI가 제공하는 다양한 서비스를 편리하게 이용하실 수 있습니다.

[해외논문] L1 retrotransposons exploit RNA m 6 A modification as an evolutionary driving force 원문보기

Nature communications, v.12 no.1, 2021년, pp.880 -   

Hwang, Sung-Yeon (Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea) ,  Jung, Hyunchul (Department of Bio and Brain Engineering, KAIST, Daejeon, Republic of Korea) ,  Mun, Seyoung (Department of Nanobiomedical Science, Dankook University, Cheonan, Republic of Korea) ,  Lee, Sungwon (Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea) ,  Park, Kiwon (Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea) ,  Baek, S. Chan (Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea) ,  Moon, Hyungseok C. (Department of Physics and Astronomy, Seoul National University, Seoul, Republic of Korea) ,  Kim, Hyewon (Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea) ,  Kim, Baekgyu (Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea) ,  Choi, Yongkuk (Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea) ,  Go, Young-Hyun (Department of Pharmacy, Seoul National University, Seoul, Republic of Korea) ,  Tang, Wanxiangfu (Department of Biological Sciences, Brock University, St. Catharines, ON Canada) ,  Choi, Jongsu (Dr. von Hauner Chil) ,  Choi, Jung Kyoon ,  Cha, Hyuk-Jin ,  Park, Hye Yoon ,  Liang, Ping ,  Kim, V. Narry ,  Han, Kyudong ,  Ahn, Kwangseog

Abstract AI-Helper 아이콘AI-Helper

L1 retrotransposons can pose a threat to genome integrity. The host has evolved to restrict L1 replication. However, mechanisms underlying L1 propagation out of the host surveillance remains unclear. Here, we propose an evolutionary survival strategy of L1, which exploits RNA m6A modification. We di...

참고문헌 (68)

  1. 1. Lander ES Initial sequencing and analysis of the human genome Nature 2001 409 860 921 10.1038/35057062 11237011 

  2. 2. Beck CR LINE-1 retrotransposition activity in human genomes Cell 2010 141 1159 1170 10.1016/j.cell.2010.05.021 20602998 

  3. 3. Brouha B Hot L1s account for the bulk of retrotransposition in the human population Proc. Natl Acad. Sci. USA 2003 100 5280 5285 10.1073/pnas.0831042100 12682288 

  4. 4. Swergold GD Identification, characterization, and cell specificity of a human LINE-1 promoter Mol. Cell Biol. 1990 10 6718 6729 10.1128/MCB.10.12.6718 1701022 

  5. 5. Martin SL Bushman FD Nucleic acid chaperone activity of the ORF1 protein from the mouse LINE-1 retrotransposon Mol. Cell Biol. 2001 21 467 475 10.1128/MCB.21.2.467-475.2001 11134335 

  6. 6. Feng Q Moran JV Kazazian HH Jr Boeke JD Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition Cell 1996 87 905 916 10.1016/S0092-8674(00)81997-2 8945517 

  7. 7. Mathias SL Scott AF Kazazian HH Jr Boeke JD Gabriel A Reverse transcriptase encoded by a human transposable element Science 1991 254 1808 1810 10.1126/science.1722352 1722352 

  8. 8. Kulpa DA Moran JV Ribonucleoprotein particle formation is necessary but not sufficient for LINE-1 retrotransposition Hum. Mol. Genet. 2005 14 3237 3248 10.1093/hmg/ddi354 16183655 

  9. 9. Luan DD Korman MH Jakubczak JL Eickbush TH Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition Cell 1993 72 595 605 10.1016/0092-8674(93)90078-5 7679954 

  10. 10. Cost GJ Feng Q Jacquier A Boeke JD Human L1 element target-primed reverse transcription in vitro EMBO J. 2002 21 5899 5910 10.1093/emboj/cdf592 12411507 

  11. 11. Goodier JL Kazazian HH Jr Retrotransposons revisited: the restraint and rehabilitation of parasites Cell 2008 135 23 35 10.1016/j.cell.2008.09.022 18854152 

  12. 12. Gasior SL Wakeman TP Xu B Deininger PL The human LINE-1 retrotransposon creates DNA double-strand breaks J. Mol. Biol. 2006 357 1383 1393 10.1016/j.jmb.2006.01.089 16490214 

  13. 13. Muotri AR Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition Nature 2005 435 903 910 10.1038/nature03663 15959507 

  14. 14. Goodier JL Restricting retrotransposons: a review Mob. DNA 2016 7 16 10.1186/s13100-016-0070-z 27525044 

  15. 15. Jacobs FM An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons Nature 2014 516 242 245 10.1038/nature13760 25274305 

  16. 16. Castro-Diaz N Evolutionally dynamic L1 regulation in embryonic stem cells Genes Dev. 2014 28 1397 1409 10.1101/gad.241661.114 24939876 

  17. 17. Fu Y Dominissini D Rechavi G He C Gene expression regulation mediated through reversible m(6)A RNA methylation Nat. Rev. Genet 2014 15 293 306 10.1038/nrg3724 24662220 

  18. 18. Meyer KD Comprehensive analysis of mRNA methylation reveals enrichment in 3’ UTRs and near stop codons Cell 2012 149 1635 1646 10.1016/j.cell.2012.05.003 22608085 

  19. 19. Dominissini D Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq Nature 2012 485 201 206 10.1038/nature11112 22575960 

  20. 20. Zheng G ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility Mol. Cell 2013 49 18 29 10.1016/j.molcel.2012.10.015 23177736 

  21. 21. Jia G N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO Nat. Chem. Biol. 2011 7 885 887 10.1038/nchembio.687 22002720 

  22. 22. Lichinchi G Dynamics of the human and viral m(6)A RNA methylomes during HIV-1 infection of T cells Nat. Microbiol 2016 1 16011 10.1038/nmicrobiol.2016.11 27572442 

  23. 23. Moran JV High frequency retrotransposition in cultured mammalian cells Cell 1996 87 917 927 10.1016/S0092-8674(00)81998-4 8945518 

  24. 24. Morrish TA DNA repair mediated by endonuclease-independent LINE-1 retrotransposition Nat. Genet. 2002 31 159 165 10.1038/ng898 12006980 

  25. 25. Klawitter S Reprogramming triggers endogenous L1 and Alu retrotransposition in human induced pluripotent stem cells Nat. Commun. 2016 7 10286 10.1038/ncomms10286 26743714 

  26. 26. Xie Y Rosser JM Thompson TL Boeke JD An W Characterization of L1 retrotransposition with high-throughput dual-luciferase assays Nucleic Acids Res. 2011 39 e16 10.1093/nar/gkq1076 21071410 

  27. 27. Abakir A N6-methyladenosine regulates the stability of RNA:DNA hybrids in human cells Nat. Genet. 2020 52 48 55 10.1038/s41588-019-0549-x 31844323 

  28. 28. Liu J N6-methyladenosine of chromosome-associated regulatory RNA regulates chromatin state and transcription Science 2020 367 580 586 10.1126/science.aay6018 31949099 

  29. 29. Garcia-Perez JL LINE-1 retrotransposition in human embryonic stem cells Hum. Mol. Genet. 2007 16 1569 1577 10.1093/hmg/ddm105 17468180 

  30. 30. Macia A Epigenetic control of retrotransposon expression in human embryonic stem cells Mol. Cell. Biol. 2011 31 300 316 10.1128/MCB.00561-10 21041477 

  31. 31. Batista PJ m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells Cell Stem Cell 2014 15 707 719 10.1016/j.stem.2014.09.019 25456834 

  32. 32. Khan H Smit A Boissinot S Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates Genome Res. 2006 16 78 87 10.1101/gr.4001406 16344559 

  33. 33. Zhou Y Zeng P Li YH Zhang Z Cui Q SRAMP: prediction of mammalian N6-methyladenosine (m6A) sites based on sequence-derived features Nucleic Acids Res 2016 44 e91 10.1093/nar/gkw104 26896799 

  34. 34. Meyer KD 5’ UTR m(6)A promotes cap-independent translation Cell 2015 163 999 1010 10.1016/j.cell.2015.10.012 26593424 

  35. 35. Zhou J Dynamic m(6)A mRNA methylation directs translational control of heat shock response Nature 2015 526 591 594 10.1038/nature15377 26458103 

  36. 36. Coots RA m(6)A facilitates eIF4F-independent mRNA translation Mol. Cell 2017 68 504 514.e507 10.1016/j.molcel.2017.10.002 29107534 

  37. 37. An W Characterization of a synthetic human LINE-1 retrotransposon ORFeus-Hs Mob. DNA 2011 2 2 10.1186/1759-8753-2-2 21320307 

  38. 38. Lee ASY Kranzusch PJ Cate JHD eIF3 targets cell-proliferation messenger RNAs for translational activation or repression Nature 2015 522 111 114 10.1038/nature14267 25849773 

  39. 39. Wang X N6-methyladenosine modulates messenger RNA translation efficiency Cell 2015 161 1388 1399 10.1016/j.cell.2015.05.014 26046440 

  40. 40. Wei W Human L1 retrotransposition: cis preference versus trans complementation Mol. Cell Biol. 2001 21 1429 1439 10.1128/MCB.21.4.1429-1439.2001 11158327 

  41. 41. Kulpa DA Moran JV Cis-preferential LINE-1 reverse transcriptase activity in ribonucleoprotein particles Nat. Struct. Mol. Biol. 2006 13 655 660 10.1038/nsmb1107 16783376 

  42. 42. Goodier JL Ostertag EM Engleka KA Seleme MC Kazazian HH Jr. A potential role for the nucleolus in L1 retrotransposition Hum. Mol. Genet. 2004 13 1041 1048 10.1093/hmg/ddh118 15028673 

  43. 43. Ergun S Cell type-specific expression of LINE-1 open reading frames 1 and 2 in fetal and adult human tissues J. Biol. Chem. 2004 279 27753 27763 10.1074/jbc.M312985200 15056671 

  44. 44. Naufer MN L1 retrotransposition requires rapid ORF1p oligomerization, a novel coiled coil-dependent property conserved despite extensive remodeling Nucleic Acids Res. 2015 44 281 293 10.1093/nar/gkv1342 26673717 

  45. 45. Doucet AJ Characterization of LINE-1 ribonucleoprotein particles PLoS Genet. 2010 6 e1001150 10.1371/journal.pgen.1001150 20949108 

  46. 46. Furano, A. V. & Boissinot, S. Long Interspersed Nuclear Elements (LINEs): Evolution. In Encyclopedia of Life Sciences (ELS) . (John Wiley & Sons, Ltd., Chichester, UK, 2008). 

  47. 47. Tang W Mun S Joshi A Han K Liang P Mobile elements contribute to the uniqueness of human genome with 15,000 human-specific insertions and 14 Mbp sequence increase DNA Res. 2018 25 521 533 10.1093/dnares/dsy022 30052927 

  48. 48. Dang, W. et al. N6-methyladenosine and viral infection. Front. Microbiol. 10.3389/fmicb.2019.00417 (2019). 

  49. 49. Sassaman DM Many human L1 elements are capable of retrotransposition Nat. Genet. 1997 16 37 43 10.1038/ng0597-37 9140393 

  50. 50. Alisch RS Garcia-Perez JL Muotri AR Gage FH Moran JV Unconventional translation of mammalian LINE-1 retrotransposons Genes Dev. 2006 20 210 224 10.1101/gad.1380406 16418485 

  51. 51. Arguello AE DeLiberto AN Kleiner RE RNA chemical proteomics reveals the N6-methyladenosine (m6A)-regulated protein–RNA interactome J. Am. Chem. Soc. 2017 139 17249 17252 10.1021/jacs.7b09213 29140688 

  52. 52. Perez-Perri JI Discovery of RNA-binding proteins and characterization of their dynamic responses by enhanced RNA interactome capture Nat. Commun. 2018 9 4408 10.1038/s41467-018-06557-8 30352994 

  53. 53. Liu N N(6)-methyladenosine-dependent RNA structural switches regulate RNA-protein interactions Nature 2015 518 560 564 10.1038/nature14234 25719671 

  54. 54. Dmitriev SE Efficient translation initiation directed by the 900-nucleotide-long and GC-rich 5’ untranslated region of the human retrotransposon LINE-1 mRNA is strictly cap dependent rather than internal ribosome entry site mediated Mol. Cell Biol. 2007 27 4685 4697 10.1128/MCB.02138-06 17470553 

  55. 55. Boissinot S Roos C Furano AV Different rates of LINE-1 (L1) retrotransposon amplification and evolution in new world monkeys J. Mol. Evol. 2004 58 122 130 10.1007/s00239-003-2539-x 14743320 

  56. 56. Marchetto MCN Differential L1 regulation in pluripotent stem cells of humans and apes Nature 2013 503 525 529 10.1038/nature12686 24153179 

  57. 57. Schneider CA Rasband WS Eliceiri KW NIH Image to ImageJ: 25 years of image analysis Nat. Methods 2012 9 671 675 10.1038/nmeth.2089 22930834 

  58. 58. Dominissini D Moshitch-Moshkovitz S Salmon-Divon M Amariglio N Rechavi G Transcriptome-wide mapping of N(6)-methyladenosine by m(6)A-seq based on immunocapturing and massively parallel sequencing Nat. Protoc. 2013 8 176 189 10.1038/nprot.2012.148 23288318 

  59. 59. Kim B Kim VN fCLIP-seq for transcriptomic footprinting of dsRNA-binding proteins: lessons from DROSHA Methods 2019 152 3 11 10.1016/j.ymeth.2018.06.004 29902563 

  60. 60. Martin M Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet 2011 17 10 12 10.14806/ej.17.1.200 

  61. 61. Dobin A STAR: ultrafast universal RNA-seq aligner Bioinformatics 2012 29 15 21 10.1093/bioinformatics/bts635 23104886 

  62. 62. Zhang Y Model-based analysis of ChIP-Seq (MACS) Genome Biol. 2008 9 R137 10.1186/gb-2008-9-9-r137 18798982 

  63. 63. Lionnet T A transgenic mouse for in vivo detection of endogenous labeled mRNA Nat. Methods 2011 8 165 170 10.1038/nmeth.1551 21240280 

  64. 64. Stein SC Thiart J TrackNTrace: a simple and extendable open-source framework for developing single-molecule localization and tracking algorithms Sci. Rep. 2016 6 37947 10.1038/srep37947 27885259 

  65. 65. Langmead B Salzberg SL Fast gapped-read alignment with Bowtie 2 Nat. Methods 2012 9 357 359 10.1038/nmeth.1923 22388286 

  66. 66. Smit, A., Hubley, R. & Green, P. RepeatMasker Open-4.0 . https://www.repeatmasker.org (2013–2015). 

  67. 67. Edgar RC MUSCLE: multiple sequence alignment with high accuracy and high throughput Nucleic Acids Res. 2004 32 1792 1797 10.1093/nar/gkh340 15034147 

  68. 68. Crooks GE Hon G Chandonia JM Brenner SE WebLogo: a sequence logo generator Genome Res. 2004 14 1188 1190 10.1101/gr.849004 15173120 

LOADING...

활용도 분석정보

상세보기
다운로드
내보내기

활용도 Top5 논문

해당 논문의 주제분야에서 활용도가 높은 상위 5개 콘텐츠를 보여줍니다.
더보기 버튼을 클릭하시면 더 많은 관련자료를 살펴볼 수 있습니다.

관련 콘텐츠

오픈액세스(OA) 유형

GOLD

오픈액세스 학술지에 출판된 논문

유발과제정보 저작권 관리 안내
섹션별 컨텐츠 바로가기

AI-Helper ※ AI-Helper는 오픈소스 모델을 사용합니다.

AI-Helper 아이콘
AI-Helper
안녕하세요, AI-Helper입니다. 좌측 "선택된 텍스트"에서 텍스트를 선택하여 요약, 번역, 용어설명을 실행하세요.
※ AI-Helper는 부적절한 답변을 할 수 있습니다.

선택된 텍스트

맨위로