[논문]Genome-Scale Analysis of Acetobacterium woodii Identifies Translational Regulation of Acetogenesis

Shin, Jongoh; Song, Yoseb; Kang, Seulgi; Jin, Sangrak; Lee, Jung-Kul; Kim, Dong Rip; Cho, Suhyung; Mü; ller, Volker; Cho, Byung-Kwan

doi:10.1128/msystems.00696-21

[해외논문] Genome-Scale Analysis of Acetobacterium woodii Identifies Translational Regulation of Acetogenesis 원문보기

mSystems, v.6 no.4, 2021년, pp.e00696-21 -

Shin, Jongoh (Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea) , Song, Yoseb (Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea) , Kang, Seulgi (Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea) , Jin, Sangrak (Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea) , Lee, Jung-Kul (Department of Chemical Engineering, Konkuk University, Seoul, Republic of Korea) , Kim, Dong Rip (Department of Mechanical Engineering, Hanyang University, Seoul, Republic of Korea) , Cho, Suhyung (Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, Republic of Korea) , Müller, Volker (Department of Molecular Microbiology and Bioenergetics, Institute of Molecular Biosciences, Johann Wolfgang Goethe University Frankfurt) , Cho, Byung-Kwan (Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Dae)

Abstract ▼ AI-Helper

ABSTRACTAcetogens synthesize acetyl-CoA via the CO2-fixing Wood-Ljungdahl pathway. Despite their ecological and biotechnological importance, their translational regulation of carbon and energy metabolisms remains unclear. Here, we report how carbon and energy metabolisms in the model acetogen Acetobacterium woodii are translationally controlled under different growth conditions. Data integration of genome-scale transcriptomic and translatomic analyses revealed that the acetogenesis genes, including those of the Wood-Ljungdahl pathway and energy metabolism, showed changes in translational efficiency under autotrophic growth conditions. In particular, genes encoding the Wood-Ljungdahl pathway are translated at similar levels to achieve efficient acetogenesis activity under autotrophic growth conditions, whereas genes encoding the carbonyl branch present increased translation levels in comparison to those for the methyl branch under heterotrophic growth conditions. The translation efficiency of genes in the pathways is differentially regulated by 5′ untranslated regions and ribosome-binding sequences under different growth conditions. Our findings provide potential strategies to optimize the metabolism of syngas-fermenting acetogenic bacteria for better productivity.IMPORTANCE Acetogens are capable of reducing CO2 to multicarbon compounds (e.g., ethanol or 2,3-butanediol) via the Wood-Ljungdahl pathway. Given that protein synthesis in bacteria is highly energy consuming, acetogens living at the thermodynamic limit of life are inevitably under translation control. Here, we dissect the translational regulation of carbon and energy metabolisms in the model acetogen Acetobacterium woodii under heterotrophic and autotrophic growth conditions. The latter may be experienced when acetogen is used as a cell factory that synthesizes products from CO2 during the gas fermentation process. We found that the methyl and carbonyl branches of the Wood-Ljungdahl pathway are activated at similar translation levels during autotrophic growth. Translation is mainly regulated by the 5′-untranslated-region structure and ribosome-binding-site sequence. This work reveals novel translational regulation for coping with autotrophic growth conditions and provides the systematic data set, including the transcriptome, translatome, and promoter/5′-untranslated-region bioparts.

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