다음과 같은 기능을 한번의 로그인으로 사용 할 수 있습니다.
NTIS 바로가기
BMC bioinformatics, v.12, 2011년, pp.136 - 136
Overall, Christopher C (Department of Bioinformatics and Genomics, University of North Carolina - Charlotte, 9201 University City Blvd., Charlotte, NC 28223-0001, USA) , Carr, D Andrew (Accelerated Technology Laboratories, Inc. 496 Holly Grove School Rd., West End, NC 27376, USA) , Tabari, Ehsan S (Department of Bioinformatics and Genomics, University of North Carolina - Charlotte, 9201 University City Blvd., Charlotte, NC 28223-0001, USA) , Thompson, Kevin J (Department of Bioinformatics and Genomics, University of North Carolina - Charlotte, 9201 University City Blvd., Charlotte, NC 28223-0001, USA) , Weller, Jennifer W (Department of Bioinformatics and Genomics, University of North Carolina - Charlotte, 9201 University City Blvd., Charlotte, NC 28223-0001, USA)
AI-Helper
BackgroundProbes on a microarray represent a frozen view of a genome and are quickly outdated when new sequencing studies extend our knowledge, resulting in significant measurement error when analyzing any microarray experiment. There are several bioinformatics approaches to improve probe assignment...
Draghici S Khatri P Eklund AC Szallasi Z Reliability and reproducibility issues in DNA microarray measurements Trends in genetics: TIG 2006 22 2 101 109 10.1016/j.tig.2005.12.005 16380191
Johnson WE Li C Rabinovic A Adjusting batch effects in microarray expression data using empirical Bayes methods Biostatistics (Oxford, England) 2007 8 118 127
Bengtsson H Jonsson G Christersson JV Calibration and assessment of channel-specific biases in microarray data with extended dynamical range BMC Bioinformatics 2004 5 177+ 10.1186/1471-2105-5-177 15541170
Shi L Tong W Su Z Han T Han J Puri R Fang H Frueh F Goodsaid F Guo L Branham W Chen J Xu ZA Harris S Hong H Xie Q Perkins R Fuscoe J Microarray scanner calibration curves: characteristics and implications BMC Bioinformatics 2005 6 Suppl 2 S11+ 16351737
Mei R Di X Ryder TB Hubbell E Dee S Webster TA Harrington CA Baid J Smeekens SP Analysis of high density expression microarrays with signed-rank call algorithms Bioinformatics 2002 18 12 1593 1599 10.1093/bioinformatics/18.12.1593 12490443
Li C Wong WH Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application Genome Biology 2001 2 8 research0032.1 research0032.11 10.1186/gb-2001-2-8-research0032 11532216
Irizarry RA Hobbs B Collin F Beazer-Barclay YD Antonellis KJ Scherf U Speed TP Exploration, normalization, and summaries of high density oligonucleotide array probe level data Biostat 2003 4 2 249 264 10.1093/biostatistics/4.2.249
Wu Z Irizarry RA Gentleman R Martinez-Murillo F Spencer F A Model-Based Background Adjustment for Oligonucleotide Expression Arrays Journal of the American Statistical Association 2004 99 468 909 917 http://pubs.amstat.org/doi/abs/10.1198/016214504000000683 10.1198/016214504000000683
Ratushna V Weller J Gibas C Secondary structure in the target as a confounding factor in synthetic oligomer microarray design BMC Genomics 2005 6 31+ 10.1186/1471-2164-6-31 15755320
Kumari S Verma L Weller J AffyMAPSDetector: a software tool to characterize Affymetrix GeneChipTM expression arrays with respect to SNPs BMC Bioinformatics 2007 8 276+ 10.1186/1471-2105-8-276 17663786
Gharaibeh R Fodor A Gibas C Background correction using dinucleotide affinities improves the performance of GCRMA BMC Bioinformatics 2008 9 452+ 10.1186/1471-2105-9-452 18947404
Gharaibeh RZ Fodor AA Gibas CJ Using probe secondary structure information to enhance Affymetrix GeneChip background estimates Computational Biology and Chemistry 2007 31 2 92 98 10.1016/j.compbiolchem.2007.02.008 17387043
Gharaibeh RZ Newton JM Weller JW Gibas CJ Application of Equilibrium Models of Solution Hybridization to Microarray Design and Analysis PLoS ONE 2010 5 6 e11048+ 20548788
Upton G Langdon W Harrison A G-spots cause incorrect expression measurement in Affymetrix microarrays BMC Genomics 2008 9 613+ 10.1186/1471-2164-9-613 19094220
Upton GJG Sanchez-Graillet O Rowsell J Arteaga-Salas JM Graham NS Stalteri MA Memon FN May ST Harrison AP On the causes of outliers in Affymetrix GeneChip data Briefings in Functional Genomics and Proteomics 2009 8 3 199 212 10.1093/bfgp/elp027 19734302
Pozhitkov AE Boube I Brouwer MH Noble PA Beyond Affymetrix arrays: expanding the set of known hybridization isotherms and observing pre-wash signal intensities Nucleic Acids Research 2010 38 5 e28 10.1093/nar/gkp1122 19969547
Carter S Eklund A Mecham B Kohane I Szallasi Z Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements BMC Bioinformatics 2005 6
Dai M Wang P Boyd AD Kostov G Athey B Jones EG Bunney WE Myers RM Speed TP Akil H Watson SJ Meng F Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data Nucleic Acids Research 2005 33 20 e175 10.1093/nar/gni179 16284200
Gautier L Møller M Friis-Hansen L Knudsen S Alternative mapping of probes to genes for Affymetrix chips BMC Bioinformatics 2004 5
Harbig J Sprinkle R Enkemann SA A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array Nucleic Acids Research 2005 33 3 e31 10.1093/nar/gni027 15722477
Kong SW Hwang KB Zhang BT Greenberg SA Kohane IS Park PJ CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays Bioinformatics 2005 21 9 2116 2117 10.1093/bioinformatics/bti288 15684227
Liu H Zeeberg BRR Gang Q Koru AGG Ferrucci A Kahn A Ryan MCC Nuhanovic A Munson PJJ Reinhold WCC Kane DWW Weinstein JNN AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets Bioinformatics 2007
Mieczkowski J Tyburczy M Dabrowski M Pokarowski P Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements BMC Bioinformatics 2010 11 104+ 10.1186/1471-2105-11-104 20181266
Sandberg R Larsson O Improved precision and accuracy for microarrays using updated probe set definitions BMC Bioinformatics 2007 8 48+ 10.1186/1471-2105-8-48 17288599
The NCBI handbook http://www.ncbi.nlm.nih.gov/books/NBK21101
Hall JL Grindle S Han X Fermin D Park S Chen Y Bache RJ Mariash A Guan Z Ormaza S Thompson J Graziano J de Sam Lazaro SE Pan S Simari RD Miller LW Genomic profiling of the human heart before and after mechanical support with a ventricular assist device reveals alterations in vascular signaling networks Physiological Genomics 2004 17 3 283 291 10.1152/physiolgenomics.00004.2004 14872006
Irizarry RA Warren D Spencer F Kim IF Biswal S Frank BC Gabrielson E Garcia JGN Geoghegan J Germino G Griffin C Hilmer SC Hoffman E Jedlicka AE Kawasaki E Martinez-Murillo F Morsberger L Lee H Petersen D Quackenbush J Scott A Wilson M Yang Y Ye SQ Yu W Multiple-laboratory comparison of microarray platforms Nature Methods 2005 2 5 345 350 10.1038/nmeth756 15846361
Gentleman RC Carey VJ Bates DM Bolstad B Dettling M Dudoit S Ellis B Gautier L Ge Y Gentry J Hornik K Hothorn T Huber W Iacus S Irizarry R Leisch F Li C Maechler M Rossini AJ Sawitzki G Smith C Smyth G Tierney L Yang JY Zhang J Bioconductor: open software development for computational biology and bioinformatics Genome Biology 2004 5 10
Affymetrix Fusion SDK http://www.affymetrix.com/partners_programs/programs/developer/fusion/index.affx?terms=no
Bengtsson H Bullard J Gentleman R Hansen KD Morgan M affxparser: Affymetrix File Parsing SDK 2009 [R package version 1.16.0]
PyQt http://www.riverbankcomputing.co.uk/software/pyqt/intro
Python http://www.python.org/
SQLite http://www.sqlite.org/
sqlite3 http://docs.python.org/library/sqlite3.html
Bhattacharjee A Richards WG Staunton J Li C Monti S Vasa P Ladd C Beheshti J Bueno R Gillette M Loda M Weber G Mark EJ Lander ES Wong W Johnson BE Golub TR Sugarbaker DJ Meyerson M Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses Proceedings of the National Academy of Sciences of the United States of America 2001 98 24 13790 13795 10.1073/pnas.191502998 11707567
Thompson K Deshmukh H Solka J Weller J A white-box approach to microarray probe response characterization: the BaFL pipeline BMC Bioinformatics 2009 10 449+ 10.1186/1471-2105-10-449 20040098
Irizarry RA Gautier L Huber W Bolstad B makecdfenv: CDF Environment Maker 2006 [R package version 1.22.0]
해당 논문의 주제분야에서 활용도가 높은 상위 5개 콘텐츠를 보여줍니다.
더보기 버튼을 클릭하시면 더 많은 관련자료를 살펴볼 수 있습니다.
*원문 PDF 파일 및 링크정보가 존재하지 않을 경우 KISTI DDS 시스템에서 제공하는 원문복사서비스를 사용할 수 있습니다.
오픈액세스 학술지에 출판된 논문
Copyright KISTI. All Rights Reserved.
※ AI-Helper는 부적절한 답변을 할 수 있습니다.