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NTIS 바로가기Bioinformatics, v.32 no.20, 2016년, pp.3072 - 3080
Kim, Junho (Severance Biomedical Science Institute, Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul 03722, South Korea) , Maeng, Ju Heon (Severance Biomedical Science Institute, Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul 03722, South Korea) , Lim, Jae Seok (Graduate School of Medical Science and Engineering, KAIST, Daejeon 34141, South Korea) , Son, Hyeonju (Severance Biomedical Science Institute, Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul 03722, South Korea) , Lee, Junehawk (Department of Convergence Technology Research, Korea Institute of Science and Technology Information, Daejeon 34141, South Korea) , Lee, Jeong Ho (Graduate School of Medical Science and Engineering, KAIST, Daejeon 34141, South Korea) , Kim, Sangwoo (Severance Biomedical Science Institute, Brain Korea 21 PLUS Project for Medical Sciences, Yonsei University College of Medicine, Seoul 03722, South Korea)
AbstractMotivation: Advances in sequencing technologies have remarkably lowered the detection limit of somatic variants to a low frequency. However, calling mutations at this range is still confounded by many factors including environmental contamination. Vector contamination is a continuously occur...
Eur. J. Clin. Microbiol. Infect. Dis Borst 23 289 2004 10.1007/s10096-004-1100-1 False-positive results and contamination in nucleic acid amplification assays: suggestions for a prevent and destroy strategy
J. Virol Cantalupo 89 4051 2015 10.1128/JVI.03365-14 HeLa nucleic acid contamination in the cancer genome atlas leads to the misidentification of human papillomavirus 18
Genome Res Castellarin 22 299 2012 10.1101/gr.126516.111 Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
Nat. Biotechnol Cibulskis 31 213 2013 10.1038/nbt.2514 Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
Epilepsia Crino 50(Suppl 9) 3 2009 10.1111/j.1528-1167.2009.02289.x Focal brain malformations: seizures, signaling, sequencing
BMC Bioinform Falgueras 11 38 2010 10.1186/1471-2105-11-38 SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read
Retrovirology Hue 7 111 2010 10.1186/1742-4690-7-111 Disease-associated XMRV sequences are consistent with laboratory contamination
N. Engl. J. Med Jamuar 371 733 2014 10.1056/NEJMoa1314432 Somatic mutations in cerebral cortical malformations
Genome Biol Kim 14 R90 2013 10.1186/gb-2013-14-8-r90 Virmid: accurate detection of somatic mutations with sample impurity inference
Proc. Natl. Acad. Sci. USA Kjartansdottir 112 E925 2015 10.1073/pnas.1423756112 Traces of ATCV-1 associated with laboratory component contamination
Genome Res Koboldt 22 568 2012 10.1101/gr.129684.111 VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing
Genome Res Kostic 22 292 2012 10.1101/gr.126573.111 Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
PLoS One Laurence 9 e97876. 2014 10.1371/journal.pone.0097876 Common contaminants in next-generation sequencing that hinder discovery of low-abundance microbes
Nat. Genet Lee 44 941 2012 10.1038/ng.2329 De novo somatic mutations in components of the PI3K-AKT3-mTOR pathway cause hemimegalencephaly
Bioinformatics Li 28 1838 2012 10.1093/bioinformatics/bts280 Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly
Bioinformatics Li 20 2865 2004 10.1093/bioinformatics/bth302 LUCY2: an interactive DNA sequence quality trimming and vector removal tool
Nat. Med Lim 21 395 2015 10.1038/nm.3824 Brain somatic mutations in MTOR cause focal cortical dysplasia type II leading to intractable epilepsy
Lancet Lopez-Rios 364 1157 2004 10.1016/S0140-6736(04)17102-X Evidence against a role for SV40 infection in human mesotheliomas and high risk of false-positive PCR results owing to presence of SV40 sequences in common laboratory plasmids
BMC Genom McElroy 13 74. 2012 10.1186/1471-2164-13-74 GemSIM: general, error-model based simulator of next-generation sequencing data
Proc. Natl. Acad. Sci. USA Naccache 111 E976 2014 10.1073/pnas.1317064111 Concerns over the origin of NIH-CQV, a novel virus discovered in Chinese patients with seronegative hepatitis
Nature Methods Pearce 6 6 2009 10.1038/nmeth.f.254 Mutation profiling in tumor samples using the Sequenom OncoCarta™ Panel
Science Poduri 341 1237758 2013 10.1126/science.1237758 Somatic mutation, genomic variation, and neurological disease
Nat. Methods Roth 11 396 2014 10.1038/nmeth.2883 PyClone: statistical inference of clonal population structure in cancer
Hum. Genom Salyakina 7 23. 2013 10.1186/1479-7364-7-23 Viral expression associated with gastrointestinal adenocarcinomas in TCGA high-throughput sequencing data
Bioinformatics Saunders 28 1811 2012 10.1093/bioinformatics/bts271 Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs
PLoS One Schmieder 6 e17288. 2011 10.1371/journal.pone.0017288 Fast identification and removal of sequence contamination from genomic and metagenomic datasets
N. Engl. J. Med Shirley 368 1971 2013 10.1056/NEJMoa1213507 Sturge-Weber syndrome and port-wine stains caused by somatic mutation in GNAQ
PLoS Pathogens Strong 10 e1004437 2014 10.1371/journal.ppat.1004437 Microbial contamination in next generation sequencing: implications for sequence-based analysis of clinical samples
Nature Communications Tang 4 2513 2013 10.1038/ncomms3513 The landscape of viral expression and host gene fusion and adaptation in human cancer
Int. J. Cancer Tang 136 977 2015 10.1002/ijc.29042 Absence of cytomegalovirus in high-coverage DNA sequencing of human glioblastoma multiforme
Parasit Vectors Tao 8 318 2015 10.1186/s13071-015-0927-x Vector sequence contamination of the Plasmodium vivax sequence database in PlasmoDB and in silico correction of 26 parasite sequences
BMC Genom Tso 15 1172 2014 10.1186/1471-2164-15-1172 Are special read alignment strategies necessary and cost-effective when handling sequencing reads from patient-derived tumor xenografts?
Genomics van der Veen 104 459 2014 10.1016/j.ygeno.2014.10.008 Metaphor: finding bi-directional best hit homology relationships in (meta)genomic datasets
Bioinformatics White 24 462 2008 10.1093/bioinformatics/btm632 Figaro: a novel statistical method for vector sequence removal
N. Engl. J. Med Wilson 370 2408 2014 10.1056/NEJMoa1401268 Actionable diagnosis of neuroleptospirosis by next-generation sequencing
Proc. Natl. Acad. Sci. US A Xu 110 10264 2013 10.1073/pnas.1303744110 Hybrid DNA virus in Chinese patients with seronegative hepatitis discovered by deep sequencing
Proc. Natl. Acad. Sci. USA Zhi 111 E977 2014 10.1073/pnas.1318965111 Reply to Naccache et al: Viral sequences of NIH-CQV virus, a contamination of DNA extraction method
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