$\require{mediawiki-texvc}$

연합인증

연합인증 가입 기관의 연구자들은 소속기관의 인증정보(ID와 암호)를 이용해 다른 대학, 연구기관, 서비스 공급자의 다양한 온라인 자원과 연구 데이터를 이용할 수 있습니다.

이는 여행자가 자국에서 발행 받은 여권으로 세계 각국을 자유롭게 여행할 수 있는 것과 같습니다.

연합인증으로 이용이 가능한 서비스는 NTIS, DataON, Edison, Kafe, Webinar 등이 있습니다.

한번의 인증절차만으로 연합인증 가입 서비스에 추가 로그인 없이 이용이 가능합니다.

다만, 연합인증을 위해서는 최초 1회만 인증 절차가 필요합니다. (회원이 아닐 경우 회원 가입이 필요합니다.)

연합인증 절차는 다음과 같습니다.

최초이용시에는
ScienceON에 로그인 → 연합인증 서비스 접속 → 로그인 (본인 확인 또는 회원가입) → 서비스 이용

그 이후에는
ScienceON 로그인 → 연합인증 서비스 접속 → 서비스 이용

연합인증을 활용하시면 KISTI가 제공하는 다양한 서비스를 편리하게 이용하실 수 있습니다.

A Rapid Throughput Method To Extract DNA from Formalin-Fixed Paraffin-Embedded Tissues for Biomonitoring Carcinogenic DNA Adducts 원문보기

Chemical research in toxicology, v.30 no.12, 2017년, pp.2130 - 2139  

Yun, Byeong Hwa ,  Xiao, Shun ,  Yao, Lihua ,  Krishnamachari, Sesha ,  Rosenquist, Thomas A. ,  Dickman, Kathleen G. ,  Grollman, Arthur P. ,  Murugan, Paari ,  Weight, Christopher J. ,  Turesky, Robert J.

Abstract AI-Helper 아이콘AI-Helper

Formalin-fixed paraffin-embedded (FFPE) tissues are rarely used for screening DNA adducts of carcinogens because the harsh conditions required to reverse the formaldehyde-mediated DNA cross-links can destroy DNA adducts. We recently adapted a commercial silica-based column kit used in genomics to ma...

참고문헌 (52)

  1. Cancer Res. Miller E. C. 1479 38 1978 

  2. Essigmann, J.M., Wood, M.L.. The relationship between the chemical structures and mutagenic specificities of the DNA lesions formed by chemical and physical mutagens. Toxicology letters, vol.67, no.1, 29-39.

  3. Poirier, Miriam C, Beland, Frederick A. Aromatic amine DNA adduct formation in chronically-exposed mice: considerations for human comparison. Mutation research. Fundamental and molecular mechanisms of mutagenesis, vol.376, no.1, 177-184.

  4. Jarabek, Annie M., Pottenger, Lynn H., Andrews, Larry S., Casciano, Daniel, Embry, Michelle R., Kim, James H., Preston, R. Julian, Reddy, M. Vijayaraj, Schoeny, Rita, Shuker, David, Skare, Julie, Swenberg, James, Williams, Gary M., Zeiger, Errol. Creating context for the use of DNA adduct data in cancer risk assessment: I. Data organization. Critical reviews in toxicology, vol.39, no.8, 659-678.

  5. Hemminki, K. DNA adducts, mutations and cancer.. Carcinogenesis, vol.14, no.10, 2007-2012.

  6. Fox, C H, Johnson, F B, Whiting, J, Roller, P P. Formaldehyde fixation.. The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society, vol.33, no.8, 845-853.

  7. Handbook of Surgical Pathology Leong A.-Y. 1996 

  8. Srinivasan, Mythily, Sedmak, Daniel, Jewell, Scott. Effect of Fixatives and Tissue Processing on the Content and Integrity of Nucleic Acids. The American journal of pathology, vol.161, no.6, 1961-1971.

  9. Poirier, Miriam C., Beland, Frederick A.. DNA adduct measurements and tumor incidence during chronic carcinogen exposure in animal models: implications for DNA adduct-based human cancer risk assessment. Chemical research in toxicology, vol.5, no.6, 749-755.

  10. 10.1093/carcin/17.5.911 

  11. Cancer Epidemiol. Biomarkers Prev. Santella R. M. 733 8 1999 

  12. Poirier, M C, Santella, R M, Weston, A. Carcinogen macromolecular adducts and their measurement.. Carcinogenesis, vol.21, no.3, 353-359.

  13. Faraglia, Beatrice, Chen, Shu Yuan, Gammon, Marilie D., Zhang, Yujing, Teitelbaum, Susan L., Neugut, Alfred I., Ahsan, Habibul, Garbowski, Gail C., Hibshoosh, Hanina, Lin, Dongxin, Kadlubar, Fred F., Santella, Regina M.. Evaluation of 4-aminobiphenyl-DNA adducts in human breast cancer: the influence of tobacco smoke. Carcinogenesis, vol.24, no.4, 719-725.

  14. Cancer Epidemiol. Biomarkers Prev. Zhu J. 830 12 2003 

  15. Douglas, Michael P, Rogers, Scott O. DNA damage caused by common cytological fixatives. Mutation research. Fundamental and molecular mechanisms of mutagenesis, vol.401, no.1, 77-88.

  16. Kunkel, Gray R., Mehrabian, Margarete, Martinson, Harold G.. Contact-site cross-linking agents. Molecular and cellular biochemistry, vol.34, no.1, 3-13.

  17. Lu, Kun, Ye, Wenjie, Zhou, Li, Collins, Leonard B., Chen, Xian, Gold, Avram, Ball, Louise M, Swenberg, James A.. Structural Characterization of Formaldehyde-Induced Cross-Links Between Amino Acids and Deoxynucleosides and Their Oligomers. Journal of the American Chemical Society, vol.132, no.10, 3388-3399.

  18. Wu, Lin, Patten, Nancy, Yamashiro, Carl T., Chui, Buena. Extraction and Amplification of DNA From Formalin-Fixed, Paraffin-Embedded Tissues :. Applied immunohistochemistry & molecular morphology : AIMM, vol.10, no.3, 269-274.

  19. Shi, Shan-Rong, Datar, Ram, Liu, Cheng, Wu, Lin, Zhang, Zina, Cote, Richard J., Taylor, Clive R.. DNA extraction from archival formalin-fixed, paraffin-embedded tissues: heat-induced retrieval in alkaline solution. Histochemistry and cell biology, vol.122, no.3, 211-218.

  20. Shibutani, S., Gentles, R. G., Iden, C. R., Johnson, Francis. Facile aerial oxidation of the DNA-base adduct N-(2'-deoxyguanosin-8-yl)-2-aminofluorene [dG(C8)AF]. Journal of the American Chemical Society, vol.112, no.14, 5667-5668.

  21. Peluso, Marco E. M., Munnia, Armelle, Tarocchi, Mirko, Giese, Roger W., Annaratone, Laura, Bussolati, Gianni, Bono, Roberto. Oxidative DNA damage and formalin-fixation procedures. Toxicology research, vol.3, no.5, 341-349.

  22. Yun, Byeong Hwa, Rosenquist, Thomas A., Nikolić, Jovan, Dragičević, Dejan, Tomić, Karla, Jelaković, Bojan, Dickman, Kathleen G., Grollman, Arthur P., Turesky, Robert J.. Human Formalin-Fixed Paraffin-Embedded Tissues: An Untapped Specimen for Biomonitoring of Carcinogen DNA Adducts by Mass Spectrometry. Analytical chemistry, vol.85, no.9, 4251-4258.

  23. Yun, Byeong Hwa, Yao, Lihua, Jelaković, Bojan, Nikolić, Jovan, Dickman, Kathleen G., Grollman, Arthur P., Rosenquist, Thomas A., Turesky, Robert J.. Formalin-fixed paraffin-embedded tissue as a source for quantitation of carcinogen DNA adducts: aristolochic acid as a prototype carcinogen. Carcinogenesis, vol.35, no.9, 2055-2061.

  24. Grollman, Arthur P.. Aristolochic acid nephropathy: Harbinger of a global iatrogenic disease. Environmental and molecular mutagenesis, vol.54, no.1, 1-7.

  25. Vaclavik, Lukas, Krynitsky, Alexander J., Rader, Jeanne I.. Quantification of aristolochic acids I and II in herbal dietary supplements by ultra-high-performance liquid chromatography-multistage fragmentation mass spectrometry. Food additives & contaminants. Part A. Chemistry, analysis, control, exposure & risk assessment, vol.31, no.5, 784-791.

  26. IARC Monographs on the Evaluation of Carcinogenic Risks to Humans. Some Traditional Herbal Medicines, Some Mycotoxins,Naphthalene and Styrene IARC 82 2002 

  27. Grollman, Arthur P., Shibutani, Shinya, Moriya, Masaaki, Miller, Frederick, Wu, Lin, Moll, Ute, Suzuki, Naomi, Fernandes, Andrea, Rosenquist, Thomas, Medverec, Zvonimir, Jakovina, Krunoslav, Brdar, Branko, Slade, Neda, Turesky, Robert J., Goodenough, Angela K., Rieger, Robert, Vukelić, Mato, Jelaković, Bojan. Aristolochic acid and the etiology of endemic (Balkan) nephropathy. Proceedings of the National Academy of Sciences of the United States of America, vol.104, no.29, 12129-12134.

  28. Chen, Chung-Hsin, Dickman, Kathleen G., Moriya, Masaaki, Zavadil, Jiri, Sidorenko, Viktoriya S., Edwards, Karen L., Gnatenko, Dmitri V., Wu, Lin, Turesky, Robert J., Wu, Xue-Ru, Pu, Yeong-Shiau, Grollman, Arthur P.. Aristolochic acid-associated urothelial cancer in Taiwan. Proceedings of the National Academy of Sciences of the United States of America, vol.109, no.21, 8241-8246.

  29. Yun, Byeong Hwa, Rosenquist, Thomas A., Sidorenko, Viktoriya, Iden, Charles R., Chen, Chung-Hsin, Pu, Yeong-Shiau, Bonala, Radha, Johnson, Francis, Dickman, Kathleen G., Grollman, Arthur P., Turesky, Robert J.. Biomonitoring of Aristolactam-DNA Adducts in Human Tissues Using Ultra-Performance Liquid Chromatography/Ion-Trap Mass Spectrometry. Chemical research in toxicology, vol.25, no.5, 1119-1131.

  30. IARC Monographs on the Evaluation of Carcinogenic Risks to Humans. Tobacco Smoking IARC 38 1986 

  31. IARC Monographs on the Evaluation of Carcinogenic Risks to Humans. Smokeless Tobacco and Some Tobacco-Specific N-Nitrosamines IARC 89 2007 

  32. Sugimura, Takashi, Wakabayashi, Keiji, Nakagama, Hitoshi, Nagao, Minako. Heterocyclic amines: Mutagens/carcinogens produced during cooking of meat and fish. Cancer Science, vol.95, no.4, 290-299.

  33. International Agency for Research on Cancer Monograph Working Group, Bouvard, V., Loomis, D., Guyton, K.Z., Grosse, Y., Ghissassi, F.E., Benbrahim-Tallaa, L., Guha, N., Mattock, H., Straif, K.. Carcinogenicity of consumption of red and processed meat. The Lancet. Oncology, vol.16, no.16, 1599-1600.

  34. Phillips, David H. Polycyclic aromatic hydrocarbons in the diet. Mutation research. Genetic toxicology and environmental mutagenesis, vol.443, no.1, 139-147.

  35. In Food Borne Carcinogens; Heterocylclic Amines Felton J. S. 2000 

  36. Jones, C. R., Sabbioni, G.. Identification of DNA Adducts Using HPLC/MS/MS Following In Vitro and In Vivo Experiments with Arylamines and Nitroarenes. Chemical research in toxicology, vol.16, no.10, 1251-1263.

  37. Bessette, Erin E., Goodenough, Angela K., Langouët, Sophie, Yasa, Isil, Kozekov, Ivan D., Spivack, Simon D., Turesky, Robert J.. Screening for DNA Adducts by Data-Dependent Constant Neutral Loss-Triple Stage Mass Spectrometry with a Linear Quadrupole Ion Trap Mass Spectrometer. Analytical chemistry, vol.81, no.2, 809-819.

  38. Guo, Jingshu, Yun, Byeong Hwa, Upadhyaya, Pramod, Yao, Lihua, Krishnamachari, Sesha, Rosenquist, Thomas A., Grollman, Arthur P., Turesky, Robert J.. Multiclass Carcinogenic DNA Adduct Quantification in Formalin-Fixed Paraffin-Embedded Tissues by Ultraperformance Liquid Chromatography–Tandem Mass Spectrometry. Analytical chemistry, vol.88, no.9, 4780-4787.

  39. Xiao, Shun, Guo, Jingshu, Yun, Byeong Hwa, Villalta, Peter W., Krishna, Suprita, Tejpaul, Resha, Murugan, Paari, Weight, Christopher J., Turesky, Robert J.. Biomonitoring DNA Adducts of Cooked Meat Carcinogens in Human Prostate by Nano Liquid Chromatography–High Resolution Tandem Mass Spectrometry: Identification of 2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine DNA Adduct. Analytical chemistry, vol.88, no.24, 12508-12515.

  40. Gu, Dan, Turesky, Robert J, Tao, Yeqing, Langou?t, Sophie A, Nauwela?rs, Gwendoline C, Yuan, Jian-Min, Yee, Douglas, Yu, Mimi C. DNA adducts of 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine and 4-aminobiphenyl are infrequently detected in human mammary tissue by liquid chromatography/tandem mass spectrometry.. Carcinogenesis, vol.33, no.1, 124-130.

  41. Biotechniques Wilfinger W. W. 474 22 1997 10.2144/97223st01 

  42. Promega Notes Kephart D. 20 92 2006 

  43. Promega Notes Schagat T. 12 97 2007 

  44. Cancer Res. Dubeau L. 2964 46 1986 

  45. Gilbert, M. Thomas P., Haselkorn, Tamara, Bunce, Michael, Sanchez, Juan J., Lucas, Sebastian B., Jewell, Laurence D., Marck, Eric Van, Worobey, Michael. The Isolation of Nucleic Acids from Fixed, Paraffin-Embedded Tissues–Which Methods Are Useful When?. PloS one, vol.2, no.6, e537-.

  46. Turashvili, G., Yang, W., McKinney, S., Kalloger, S., Gale, N., Ng, Y., Chow, K., Bell, L., Lorette, J., Carrier, M., Luk, M., Aparicio, S., Huntsman, D., Yip, S.. Nucleic acid quantity and quality from paraffin blocks: Defining optimal fixation, processing and DNA/RNA extraction techniques. Experimental and molecular pathology, vol.92, no.1, 33-43.

  47. Bonin, Serena, Hlubek, Falk, Benhattar, Jean, Denkert, Carsten, Dietel, Manfred, Fernandez, Pedro L., Höfler, Gerald, Kothmaier, Hannelore, Kruslin, Bozo, Mazzanti, Chiara Maria, Perren, Aurel, Popper, Helmuth, Scarpa, Aldo, Soares, Paula, Stanta, Giorgio, Groenen, Patricia J. T. A.. Multicentre validation study of nucleic acids extraction from FFPE tissues. Virchows Archiv : an international journal of pathology, vol.457, no.3, 309-317.

  48. Goodenough, A. K., Schut, H. A. J., Turesky, R. J.. Novel LC-ESI/MS/MSn Method for the Characterization and Quantification of 2‘-Deoxyguanosine Adducts of the Dietary Carcinogen 2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine by 2-D Linear Quadrupole Ion Trap Mass Spectrometry. Chemical research in toxicology, vol.20, no.2, 263-276.

  49. Bessette, Erin E., Spivack, Simon D., Goodenough, Angela K., Wang, Tao, Pinto, Shailesh, Kadlubar, Fred F., Turesky, Robert J.. Identification of Carcinogen DNA Adducts in Human Saliva by Linear Quadrupole Ion Trap/Multistage Tandem Mass Spectrometry. Chemical research in toxicology, vol.23, no.7, 1234-1244.

  50. Friesen, Marlin D., Kaderlik, Keith, Lin, Dongxin, Garren, Liliane, Bartsch, Helmut, Lang, Nicholas P., Kadlubar, Fred F.. Analysis of DNA Adducts of 2-Amino-1-methyl-6-phenylimidazo[4,5-b]pyridine in Rat and Human Tissues by Alkaline Hydrolysis and Gas Chromatography/Electron Capture Mass Spectrometry: Validation by Comparison with 32P-Postlabeling. Chemical research in toxicology, vol.7, no.6, 733-739.

  51. Singh, R., Gaskell, M., Le Pla, R. C., Kaur, B., Azim-Araghi, A., Roach, J., Koukouves, G., Souliotis, V. L., Kyrtopoulos, S. A., Farmer, P. B.. Detection and Quantitation of Benzo[a]pyrene-Derived DNA Adducts in Mouse Liver by Liquid Chromatography−Tandem Mass Spectrometry: Comparison with 32P-Postlabeling. Chemical research in toxicology, vol.19, no.6, 868-878.

  52. Cancer Res. Peterson L. A. 5557 51 1991 

관련 콘텐츠

오픈액세스(OA) 유형

GREEN

저자가 공개 리포지터리에 출판본, post-print, 또는 pre-print를 셀프 아카이빙 하여 자유로운 이용이 가능한 논문

저작권 관리 안내
섹션별 컨텐츠 바로가기

AI-Helper ※ AI-Helper는 오픈소스 모델을 사용합니다.

AI-Helper 아이콘
AI-Helper
안녕하세요, AI-Helper입니다. 좌측 "선택된 텍스트"에서 텍스트를 선택하여 요약, 번역, 용어설명을 실행하세요.
※ AI-Helper는 부적절한 답변을 할 수 있습니다.

선택된 텍스트

맨위로