다음과 같은 기능을 한번의 로그인으로 사용 할 수 있습니다.
NTIS 바로가기
Microbiome, v.6 no.1, 2018년, pp.198 -
Armstrong, Abigail J. S. (Department of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO USA) , Shaffer, Michael (Department of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO USA) , Nusbacher, Nichole M. (Department of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO USA) , Griesmer, Christine (Department of Surgery, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO USA) , Fiorillo, Suzanne (Department of Surgery, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO USA) , Schneider, Jennifer M. (Department of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO USA) , Preston Neff, C. (Department of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO USA) , Li, Sam X. (Department of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO USA) , Fontenot, Andrew P. (Department of Medicine, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO USA) , Campbell, Thomas (Department of Surgery, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO USA) , Palmer, Brent E. (Department of Medicine, Universit) , Lozupone, Catherine A.
AI-Helper
BackgroundGut microbiome characteristics associated with HIV infection are of intense research interest but a deep understanding has been challenged by confounding factors across studied populations. Notably, a Prevotella-rich microbiome described in HIV-infected populations is now understood to be ...
1. UNAIDS. 2017. Latest global and regional statistics on the status of the AIDS epidemic. http://www.unaids.org/sites/default/files/media_asset/UNAIDS_FactSheet_en.pdf . Accessed.
2. Neff CP Krueger O Xiong K Arif S Nusbacher N Schneider JM Cunningham AW Armstrong A Li S McCarter MD Campbell TB Lozupone CA Palmer BE Fecal microbiota composition drives immune activation in HIV-infected individuals EBioMedicine 2018 30 192 202 10.1016/j.ebiom.2018.03.024 29650491
3. Taha TE Hoover DR Dallabetta GA Kumwenda NI Mtimavalye LA Yang LP Liomba GN Broadhead RL Chiphangwi JD Miotti PG Bacterial vaginosis and disturbances of vaginal flora: association with increased acquisition of HIV AIDS 1998 12 1699 1706 10.1097/00002030-199813000-00019 9764791
4. Burgener A McGowan I Klatt NR HIV and mucosal barrier interactions: consequences for transmission and pathogenesis Curr Opin Immunol 2015 36 22 30 10.1016/j.coi.2015.06.004 26151777
5. CDC. 2017. HIV in the United States: at a glance. In: Prevention, C. F. D. C. A. (ed.). Accessed.
6. Somsouk M Estes JD Deleage C Dunham RM Albright R Inadomi JM Martin JN Deeks SG McCune JM Hunt PW Gut epithelial barrier and systemic inflammation during chronic HIV infection AIDS 2015 29 43 51 10.1097/QAD.0000000000000511 25387317
7. Dieffenbach CW Fauci AS Thirty years of HIV and AIDS: future challenges and opportunities Ann Intern Med 2011 154 766 771 10.7326/0003-4819-154-11-201106070-00345 21628350
8. Montessori V Press N Harris M Akagi L Montaner JSG Adverse effects of antiretroviral therapy for HIV infection CMAJ 2004 170 229 238 14734438
9. Kelley CF Kraft CS de Man TJ Duphare C Lee HW Yang J Easley KA Tharp GK Mulligan MJ Sullivan PS Bosinger SE Amara RR The rectal mucosa and condomless receptive anal intercourse in HIV-negative MSM: implications for HIV transmission and prevention Mucosal Immunol 2017 10 996 1007 10.1038/mi.2016.97 27848950
10. Vijay-Kumar M Aitken JD Carvalho FA Cullender TC Mwangi S Srinivasan S Sitaraman SV Knight R Ley RE Gewirtz AT Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5 Science 2010 328 228 231 10.1126/science.1179721 20203013
11. Koeth RA Wang Z Levison BS Buffa JA Org E Sheehy BT Britt EB Fu X Wu Y Li L Smith JD DiDonato JA Chen J Li H Wu GD Lewis JD Warrier M Brown JM Krauss RM Tang WHW Bushman FD Lusis AJ Hazen SL Intestinal microbiota metabolism of L-carnitine, a nutrient in red meat, promotes atherosclerosis Nat Med 2013 19 576 585 10.1038/nm.3145 23563705
12. Honda K Littman DR The microbiome in infectious disease and inflammation Annu Rev Immunol 2012 30 759 795 10.1146/annurev-immunol-020711-074937 22224764
13. Li SX Armstrong AJS Neff CP Shaffer M Lozupone CA Palmer BE Complexities of gut microbiome dysbiosis in the context of HIV infection and antiretroviral therapy Clin Pharmacol Ther 2016 00 1 12
14. Lozupone CA Li M Campbell TB Flores SC Linderman D Gebert MJ Knight R Fontenot AP Palmer BE Alterations in the gut microbiota associated with HIV-1 infection Cell Host Microbe 2013 14 329 339 10.1016/j.chom.2013.08.006 24034618
15. Mutlu EA Keshavarzian A Losurdo J Swanson G Siewe B Forsyth C French A Demarais P Sun Y Koenig L Cox S Engen P Chakradeo P Abbasi R Gorenz A Burns C Landay A A compositional look at the human gastrointestinal microbiome and immune activation parameters in HIV infected subjects PLoS Path 2014 10 e1003829 10.1371/journal.ppat.1003829
16. Dillon SM Lee EJ Kotter CV Austin GL Dong Z Hecht DK Gianella S Siewe B Smith DM Landay AL Robertson CE Frank DN Wilson CC An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia Mucosal Immunol 2014 7 983 994 10.1038/mi.2013.116 24399150
17. Vázquez-Castellanos JF Serrano-Villar S Latorre A Artacho A Ferrús ML Madrid N Vallejo A Sainz T Martínez-Botas J Ferrando-Martínez S Vera M Dronda F Leal M Del Romero J Moreno S Estrada V Gosalbes MJ Moya A Altered metabolism of gut microbiota contributes to chronic immune activation in HIV-infected individuals Mucosal Immunol 2015 8 760 772 10.1038/mi.2014.107 25407519
18. Noguera-Julian M Rocafort M Guillén Y Rivera J Casadellà M Nowak P Hildebrand F Zeller G Parera M Bellido R Rodríguez C Carrillo J Mothe B Coll J Bravo I Estany C Herrero C Saz J Sirera G Torrela A Navarro J Crespo M Brander C Negredo E Blanco J Guarner F Calle ML Bork P Sönnerborg A Clotet B Paredes R Gut microbiota linked to sexual preference and HIV infection EBioMedicine 2016 5 135 146 10.1016/j.ebiom.2016.01.032 27077120
19. Ley RE Gut microbiota in 2015: Prevotella in the gut: choose carefully Nat Publ Group 2016 13 69 70
20. Arumugam M Raes J Pelletier E Le Paslier D Yamada T Mende DR Fernandes GR Tap J Bruls T Batto J-M Bertalan M Borruel N Casellas F Fernandez L Gautier L Hansen T Hattori M Hayashi T Kleerebezem M Kurokawa K Leclerc M Levenez F Manichanh C Nielsen HB Nielsen T Pons N Poulain J Qin J Sicheritz-Ponten T Tims S Torrents D Ugarte E Zoetendal EG Wang J Guarner F Pedersen O de Vos WM Brunak S Doré J Antolín M Artiguenave F Blottiere HM Almeida M Brechot C Cara C Chervaux C Cultrone A Delorme C Denariaz G Dervyn R Enterotypes of the human gut microbiome Nature 2011 473 174 180 10.1038/nature09944 21508958
21. Wu GD Chen J Hoffmann C Bittinger K Chen Y-Y Keilbaugh SA Bewtra M Knights D Walters WA Knight R Sinha R Gilroy E Gupta K Baldassano R Nessel L Li H Bushman FD Lewis JD Linking long-term dietary patterns with gut microbial enterotypes Science 2011 334 105 108 10.1126/science.1208344 21885731
22. Kovatcheva-Datchary P Nilsson A Akrami R Lee Ying S De Vadder F Arora T Hallen A Martens E Björck I Bäckhed F Dietary fiber-induced improvement in glucose metabolism is associated with increased abundance of Prevotella Cell Metab 2015 22 971 982 10.1016/j.cmet.2015.10.001 26552345
23. Albenberg LG Wu GD Diet and the intestinal microbiome: associations, functions, and implications for health and disease Gastroenterology 2014 146 1564 1572 10.1053/j.gastro.2014.01.058 24503132
24. Scher JU Sczesnak A Longman RS Segata N Ubeda C Bielski C Rostron T Cerundolo V Pamer EG Abramson SB Huttenhower C Littman DR Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis eLife 2013 2 e01202 10.7554/eLife.01202 24192039
25. Zhang H DiBaise JK Zuccolo A Kudrna D Braidotti M Yu Y Parameswaran P Crowell MD Wing R Rittmann BE Krajmalnik-Brown R Human gut microbiota in obesity and after gastric bypass Proc Natl Acad Sci U S A 2009 106 2365 2370 10.1073/pnas.0812600106 19164560
26. Pinto-Cardoso S Lozupone C Briceno O Alva-Hernandez S Tellez N Adriana A Murakami-Ogasawara A Reyes-Teran G Fecal bacterial communities in treated HIV infected individuals on two antiretroviral regimens Sci Rep 2017 7 43741 10.1038/srep43741 28262770
27. Pedersen HK Gudmundsdottir V Nielsen HB Hyotylainen T Nielsen T Jensen BA Forslund K Hildebrand F Prifti E Falony G Le Chatelier E Levenez F Dore J Mattila I Plichta DR Poho P Hellgren LI Arumugam M Sunagawa S Vieira-Silva S Jorgensen T Holm JB Trost K Meta HITC Kristiansen K Brix S Raes J Wang J Hansen T Bork P Brunak S Oresic M Ehrlich SD Pedersen O Human gut microbes impact host serum metabolome and insulin sensitivity Nature 2016 535 376 381 10.1038/nature18646 27409811
28. Gianella S Strain MC Rought SE Vargas MV Little SJ Richman DD Spina CA Smith DM Associations between virologic and immunologic dynamics in blood and in the male genital tract J Virol 2012 86 1307 1315 10.1128/JVI.06077-11 22114342
29. Palmer CD Tomassilli J Sirignano M Romero-Tejeda M Arnold KB Che D Lauffenburger DA Jost S Allen T Mayer KH Altfeld M Enhanced immune activation linked to endotoxemia in HIV-1 seronegative MSM AIDS 2014 28 2162 2166 10.1097/QAD.0000000000000386 25003719
30. Faith DP Phylogenetic pattern and the quantification of organismal biodiversity Philos Trans R Soc Lond Ser B Biol Sci 1994 345 45 58 10.1098/rstb.1994.0085 7972354
31. Costea PI Hildebrand F Arumugam M Backhed F Blaser MJ Bushman FD de Vos WM Ehrlich SD Fraser CM Hattori M Huttenhower C Jeffery IB Knights D Lewis JD Ley RE Ochman H O'Toole PW Quince C Relman DA Shanahan F Sunagawa S Wang J Weinstock GM Wu GD Zeller G Zhao L Raes J Knight R Bork P Enterotypes in the landscape of gut microbial community composition Nat Microbiol 2018 3 8 16 10.1038/s41564-017-0072-8 29255284
32. Gevers D Knight R Petrosino JF Huang K McGuire AL Birren BW Nelson KE White O Methe BA Huttenhower C The Human Microbiome Project: a community resource for the healthy human microbiome PLoS Biol 2012 10 e1001377 10.1371/journal.pbio.1001377 22904687
33. Qin J Li R Raes J Arumugam M Burgdorf KS Manichanh C Nielsen T Pons N Levenez F Yamada T Mende DR Li J Xu J Li S Li D Cao J Wang B Liang H Zheng H Xie Y Tap J Lepage P Bertalan M Batto J-M Hansen T Le Paslier D Linneberg A Nielsen HB Pelletier E Renault P Sicheritz-Ponten T Turner K Zhu H Yu C Li S Jian M Zhou Y Li Y Zhang X Li S Qin N Yang H Wang J Brunak S Doré J Guarner F Kristiansen K Pedersen O Parkhill J Weissenbach J A human gut microbial gene catalogue established by metagenomic sequencing Nature 2010 464 59 65 10.1038/nature08821 20203603
34. Volpe GE Ward H Mwamburi M Dinh D Bhalchandra S Wanke C Kane AV Associations of cocaine use and HIV infection with the intestinal microbiota, microbial translocation, and inflammation J Stud Alcohol Drugs 2014 75 347 357 10.15288/jsad.2014.75.347 24650829
35. Ndongo S Cadoret F Dubourg G Delerce J Fournier PE Raoult D Lagier JC ‘Collinsella phocaeensis’ sp. nov., ‘Clostridium merdae’ sp. nov., ‘Sutterella massiliensis’ sp. nov., ‘Sutturella timonensis’ sp. nov., ‘Enorma phocaeensis’ sp. nov., ‘Mailhella massiliensis’ gen. nov., sp. nov., ‘Mordavella massiliensis’ gen. nov., sp. nov. and ‘Massiliprevotella massiliensis’ gen. nov., sp. nov., 9 new species isolated from fresh stool samples of healthy French patients New Microbes New Infect 2017 17 89 95 10.1016/j.nmni.2017.02.005 28409003
36. Nowak Piotr Troseid Marius Avershina Ekatarina Barqasho Babilonia Neogi Ujjwal Holm Kristian Hov Johannes R. Noyan Kajsa Vesterbacka Jan Svärd Jenny Rudi Knut Sönnerborg Anders Gut microbiota diversity predicts immune status in HIV-1 infection AIDS 2015 29 18 2409 2418 10.1097/QAD.0000000000000869 26355675
37. McHardy IH Li X Tong M Ruegger P Jacobs J Borneman J Anton P Braun J HIV infection is associated with compositional and functional shifts in the rectal mucosal microbiota Microbiome 2013 1 26 10.1186/2049-2618-1-26 24451087
38. Lozupone CA Rhodes ME Neff CP Fontenot AP Campbell TB Palmer BE HIV-induced alteration in gut microbiota Gut Microbes 2014 5 562 570 10.4161/gmic.32132 25078714
39. Monaco CL Gootenberg DB Zhao G Handley SA Ghebremichael MS Lim ES Lankowski A Baldridge MT Wilen CB Flagg M Norman JM Keller BC Luevano JM Wang D Boum Y Martin JN Hunt PW Bangsberg DR Siedner MJ Kwon DS Virgin HW Altered virome and bacterial microbiome in human immunodeficiency virus-associated acquired immunodeficiency syndrome Cell Host Microbe 2016 19 311 322 10.1016/j.chom.2016.02.011 26962942
40. Bosshard PP Zbinden R Altwegg M Turicibacter sanguinis gen. nov., sp. nov., a novel anaerobic, Gram-positive bacterium Int J Syst Evol Microbiol 2002 52 1263 1266 12148638
41. Tadepalli S Stewart GC Nagaraja TG Narayanan SK Human Fusobacterium necrophorum strains have a leukotoxin gene and exhibit leukotoxic activity J Med Microbiol 2008 57 225 231 10.1099/jmm.0.47598-0 18201990
42. Goto T Yamashita A Hirakawa H Matsutani M Todo K Ohshima K Toh H Miyamoto K Kuhara S Hattori M Shimizu T Akimoto S Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen DNA Res 2008 15 39 47 10.1093/dnares/dsm030 18263572
43. Mitchell J Streptococcus mitis: walking the line between commensalism and pathogenesis Mol Oral Microbiol 2011 26 89 98 10.1111/j.2041-1014.2010.00601.x 21375700
44. Lee S Roh KH Kim CK Yong D Choi JY Lee JW Lee K Chong Y A case of necrotizing fasciitis due to Streptococcus agalactiae, Arcanobacterium haemolyticum, and Finegoldia magna in a dog-bitten patient with diabetes Korean J Lab Med 2008 28 191 195 10.3343/kjlm.2008.28.3.191 18594170
45. Kawamura Y Hou XG Todome Y Sultana F Hirose K Shu SE Ezaki T Ohkuni H Streptococcus peroris sp. nov. and Streptococcus infantis sp. nov., new members of the Streptococcus mitis group, isolated from human clinical specimens Int J Syst Bacteriol 1998 48 Pt 3 921 927 10.1099/00207713-48-3-921 9734047
46. Vesterbacka J Rivera J Noyan K Parera M Neogi U Calle M Paredes R Sonnerborg A Noguera-Julian M Nowak P Richer gut microbiota with distinct metabolic profile in HIV infected elite controllers Sci Rep 2017 7 6269 10.1038/s41598-017-06675-1 28740260
47. Hammer SM Sobieszczyk ME Janes H Karuna ST Mulligan MJ Grove D Koblin BA Buchbinder SP Keefer MC Tomaras GD Frahm N Hural J Anude C Graham BS Enama ME Adams E DeJesus E Novak RM Frank I Bentley C Ramirez S Fu R Koup RA Mascola JR Nabel GJ Montefiori DC Kublin J McElrath MJ Corey L Gilbert PB Team HS Efficacy trial of a DNA/rAd5 HIV-1 preventive vaccine N Engl J Med 2013 369 2083 2092 10.1056/NEJMoa1310566 24099601
48. Thompson LR Sanders JG McDonald D Amir A Ladau J Locey KJ Prill RJ Tripathi A Gibbons SM Ackermann G Navas-Molina JA Janssen S Kopylova E Vazquez-Baeza Y Gonzalez A Morton JT Mirarab S Zech Xu Z Jiang L Haroon MF Kanbar J Zhu Q Jin Song S Kosciolek T Bokulich NA Lefler J Brislawn CJ Humphrey G Owens SM Hampton-Marcell J Berg-Lyons D McKenzie V Fierer N Fuhrman JA Clauset A Stevens RL Shade A Pollard KS Goodwin KD Jansson JK Gilbert JA Knight R Earth Microbiome Project C A communal catalogue reveals Earth’s multiscale microbial diversity Nature 2017 551 457 463 10.1038/551033a 29088705
49. Caporaso JG Kuczynski J Stombaugh J Bittinger K Bushman FD Costello EK Fierer N Peña AG Goodrich JK Gordon JI Huttley GA Kelley ST Knights D Koenig JE Ley RE Lozupone CA McDonald D Muegge BD Pirrung M Reeder J Sevinsky JR Turnbaugh PJ Walters WA Widmann J Yatsunenko T Zaneveld J Knight R QIIME allows analysis of high-throughput community sequencing data Nat Methods 2010 7 335 336 10.1038/nmeth.f.303 20383131
50. Callahan BJ McMurdie PJ Rosen MJ Han AW Johnson AJ Holmes SP DADA2: high-resolution sample inference from Illumina amplicon data Nat Methods 2016 13 581 583 10.1038/nmeth.3869 27214047
51. Kopylova E Noe L Touzet H SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data Bioinformatics 2012 28 3211 3217 10.1093/bioinformatics/bts611 23071270
52. Edgar RC Search and clustering orders of magnitude faster than BLAST Bioinformatics 2010 26 2460 2461 10.1093/bioinformatics/btq461 20709691
53. McDonald D Price MN Goodrich J Nawrocki EP DeSantis TZ Probst A Andersen GL Knight R Hugenholtz P An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea ISME J 2012 6 610 618 10.1038/ismej.2011.139 22134646
54. Lozupone C Knight R UniFrac: a new phylogenetic method for comparing microbial communities Appl Environ Microbiol 2005 71 8228 8235 10.1128/AEM.71.12.8228-8235.2005 16332807
55. Lozupone CA Hamady M Kelley ST Knight R Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities Appl Environ Microbiol 2007 73 1576 1585 10.1128/AEM.01996-06 17220268
56. Jaccard P The distribution of the flora in the alpine zone 1 New Phytol 1912 11 37 50 10.1111/j.1469-8137.1912.tb05611.x
57. Friedman J Alm EJ Inferring correlation networks from genomic survey data PLoS Comput Biol 2012 8 e1002687 10.1371/journal.pcbi.1002687 23028285
58. National Institues of Health EaGRP, Nactional Cancer Institute Diet history questionnaire, version 2.0 2010
59. National Cancer Institute EaGRP Diet*Calc analysis program, version 1.5.0 2012
60. Jari Oksanen FGB, Michael Friendly, Roeland Kindt, Pierre Legendre, Dan McGlinn, Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs and Helene Wagner 2017 vegan: community ecology package, vR package version 2.4–4. https://CRAN.R-project.org/package=vegan .
Copyright KISTI. All Rights Reserved.
※ AI-Helper는 부적절한 답변을 할 수 있습니다.