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NTIS 바로가기Scientific reports, v.9, 2019년, pp.869 -
Jung, Youngkyun (Supercomputing Center, Korea Institute of Science and Technology Information, Daejeon, 34141 Korea) , Ha, Bae-Yeun (Department of Physics and Astronomy, University of Waterloo, Waterloo, Ontario N2L 3G1 Canada)
Helical organization is commonly observed for a variety of biopolymers. Here we study the helical organization of two types of biopolymers, i.e., DNA-like semiflexible and bottle-brush polymers, in a cell-like confined space. A bottle-brush polymer consists of a backbone and side chains emanating fr...
1. Dill KA Principles of protein folding–a perspective from simple exact models Protein Sci. 1995 4 561 602 10.1002/pro.5560040401 7613459
2. Buehler MJ Nature designs tough collagen: Explaining the nanostructure of collagen fibrils Proc. Natl, Acad. Sci 2006 103 12285 12290 10.1073/pnas.0603216103 16895989
3. Le TBK Imakaev MV Mirny LA Laub MT High-resolution mapping of the spatial organization of a bacterial chromosome Science 2013 342 731 734 10.1126/science.1242059 24158908
4. Fisher JK Four-dimensional imaging of E. coli nucleoid organization and dynamics in living cells Cell 2013 153 882 895 10.1016/j.cell.2013.04.006 23623305
5. Berlatzky IA Rouvinski A Ben-Yehuda S Spatial organization of a replicating bacterial chromosome Proc. Natl. Acad. Sci 2008 105 14136 14140 10.1073/pnas.0804982105 18779567
6. Yazdi NH Guet CC Johnson RC Marko JF Variation of the folding and dynamics of the Escherichia col i chromosome with growth conditions Mol. Microbiol. 2012 86 1318 1333 10.1111/mmi.12071 23078205
7. Chan H-K Densest columnar structures of hard spheres from sequential deposition Phys. Rev. E 2011 84 050302(R) 1–4 10.1103/PhysRevE.84.050302
8. Wang X Llopis PM Rudner DZ Organization and segregation of bacterial chromosomes Nat. Rev. Genet. 2013 14 191 203 10.1038/nrg3375 23400100
9. Ha B-Y Jung Y Polymers under confinement: single polymers, how they interact, and as model chromosomes Soft Matter 2015 11 2333 2352 10.1039/C4SM02734E 25710099
10. Jun S Wright A Entropy as the driver of chromosome segregation Nat. Rev. Microbiol. 2010 8 600 607 10.1038/nrmicro2391 20634810
11. Pelletier J Physical manipulation of the Escherichia coli chromosome reveals its soft nature Proc. Nat. Acad. Sci. USA 2012 109 E2649 E2656 10.1073/pnas.1208689109 22984156
12. Benza VG Physical descriptions of the bacterial nucleoid at large scales, and their biological implications Rep. Prog. Phys. 2012 75 076602 1–20 10.1088/0034-4885/75/7/076602 22790781
13. Hsu H-P Paul W Rathgeber S Binder K Characteristic length scales and radial monomer density profiles of molecular bottle-brushes: simulation and experiment Macromolecules 2010 43 1592 1601 10.1021/ma902101n
14. Paturej J Sheiko SS Panyukov S Rubinstein M Molecular structure of bottlebrush polymers in melts Sci. Adv. 2016 2 e1601478 1–12 10.1126/sciadv.1601478 28861466
15. Calladine, C. R., Drew, H., Luisi, B. & Travers, A. Understanding DNA: The Molecule and How it Works , 3rd edit. (Academic Press, 2004).
16. Jian H Schlick T Vologodskii A Internal motion of supercoiled DNA: Brownian dynamics simulations of site juxtapostion J. Mol. Biol. 1998 284 287 296 10.1006/jmbi.1998.2170 9813118
17. Hayase Y Sakaue T Nakanishi H Compressive response and helix formation of a semiflexible polymer confined in a nanochannel Phys. Rev. E 2017 95 052502 1–6 10.1103/PhysRevE.95.052502 28618466
18. Chaudhuri D Mulder BM Spontaneous helicity of a polymer with side loops confined to a cylinder Phys. Rew. Lett. 2012 108 268305 1–5 10.1103/PhysRevLett.108.268305
20. Kremer K Grest GS Dynamics of entangled linear polymer melts: A molecular-dynamics simulation J. Chem. Phys. 1990 92 5057 5086 10.1063/1.458541
21. Grest GS Kremer K Molecular dynamics simulation for polymers in the presence of a heat bath Phys. Rev. A 1986 33 R3628 R3631 10.1103/PhysRevA.33.3628
22. Weeks JD Chandler D Andersen HC Role of repulsive forces in determining the equilibrium structure of simple liquids J. Chem. Phys. 1971 54 5237 5247 10.1063/1.1674820
23. de Gennes, P.-G. Scaling Concepts in Polymer Physics (Cornell University Press, 1979).
24. Allison SA Brownian dynamics simulation of Wormlike chains. Fluorescence depolarization and depolarized light scattering Macromolecules 1986 19 118 124 10.1021/ma00155a019
25. Plimpton S Fast parallel algorithms for short-range molecular dynamics J. Comput. Phys. 1995 117 1 19 10.1006/jcph.1995.1039
26. Bates, A. D. & Maxwell, A. DNA Topology (Oxford University Press, 2005).
27. Klenin K Langowski J Computation of writhe in modeling of supercoiled DNA Biopolymers 2000 54 307 317 10.1002/1097-0282(20001015)54:5 3.0.CO;2-Y 10935971
28. Reisner W Pedersen JN Austin RH DNA confinement in nanochannels: physics and biological applications Rep. Prog. Phys. 2012 75 106601 1–34 10.1088/0034-4885/75/10/106601 22975868
29. Jun S Thirumalai D Ha B-Y Compression and stretching of a self-avoiding chain in cylindrical nanopores Phys. Rev. Lett. 2008 101 138101 1–4 10.1103/PhysRevLett.101.138101 18851496
30. Wang Y Tree DR Dorfman KD Simulation of DNA extension in nanochannels Macromolecules 2011 44 6594 6604 10.1021/ma201277e 21860535
31. Khorshid A Amin S Zhang Z Sakaue T Reisner W Nonequilibrium dynamics of nanochannel confined DNA Macromolecules 2016 49 1933 1940 10.1021/acs.macromol.5b02240
32. Jung Y Ring polymers as model bacterial chromosomes: confinement, chain topology, single chain statistics, and how they interact Soft Matter 2012 8 2095 2102 10.1039/C1SM05706E
33. Hsu H-P Binder K Paul W How to define variation of physical properties normal to an undulating one-dimensional object Phys. Rev. Lett. 2009 103 198301 1–4 10.1103/PhysRevLett.103.198301 20365959
34. Bakshi S Choi H Weisshaar JC The spatial biology of transcription and translation in rapidly growing Escherichia coli Front. Microbiol. 2015 6 636 1–15 10.3389/fmicb.2015.00636 26191045
35. Jeon C Hyeon C Jung Y Ha B-Y How are molecular crowding and the spatial organization of a biopolymer interrelated Soft Matter 2016 12 9786 9796 10.1039/C6SM01924B 27858047
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