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Frontiers in molecular biosciences, v.2, 2015년, pp.37 -
Velazquez Escobar, Francisco (Institut fü) , von Stetten, David (r Chemie, Technische Universitä) , Günther-Lütkens, Mina (t Berlin) , Keidel, Anke (Institut fü) , Michael, Norbert (r Chemie, Technische Universitä) , Lamparter, Tilman (t Berlin) , Essen, Lars-Oliver (Institut fü) , Hughes, Jon (r Chemie, Technische Universitä) , Gärtner, Wolfgang (t Berlin) , Yang, Yang (Institut fü) , Heyne, Karsten (r Chemie, Technische Universitä) , Mroginski, Maria A. (t Berlin) , Hildebrandt, Peter (Institut fü)
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Phytochromes are biological photoreceptors that can be reversibly photoconverted between a dark and photoactivated state. The underlying reaction sequences are initiated by the photoisomerization of the tetrapyrrole cofactor, which in plant and cyanobacterial phytochromes are a phytochromobilin (P&P...
Andel F. III. Murphy J. T. Haas J. A. McDowell M. T. van der Hoef I. Lugtenburg J. . ( 2000 ). Probing the photoreaction mechanism of phytochrome through the vibrational analysis of resonance raman spectra of recombinant analogs . Biochemistry 39 , 2667 – 2676 . 10.1021/bi991688z 10704217
Anders K. Daminelli-Widany G. Mroginski M. A. von Stetten D. Essen L. O. ( 2013 ). Structure of the cyanobacterial phytochrome 2 photosensor implies a tryptophan switch for phytochrome signaling . J. Biol. Chem . 288 , 35714 – 35725 . 10.1074/jbc.M113.510461 24174528
Anders K. Gutt A. Gärtner W. Essen L. O. ( 2014 ). Phototransformation of the red light sensor cyanobacterial phytochrome 2 from synechocystis species depends on its tongue motifs . J. Biol. Chem . 289 , 25590 – 25600 . 10.1074/jbc.M114.562082 25012656
Anders K. von Stetten D. Mailliet J. Kiontke S. Sineshchekov V. A. Hildebrandt P. . ( 2011 ). Spectroscopic characterisation of the red light sensitive photosensory module of Cph2 from Synechocystis sp. PCC 6803 . Photochem. Photobiol . 87 , 160 – 173 . 10.1111/j.1751-1097.2010.00845.x 21091956
Bellini D. Papiz M. Z. ( 2012 ). Dimerization properties of the RpBphP2 chromophore-binding domain crystallized by homologue-directed mutagenesis . Acta Cryst. D 68 , 1058 – 1066 . 10.1107/S0907444912020537 22868772
Borucki B. Otoo H. Rottwinkel G. Hughes J. Heyn M. P. Lamparter T. ( 2003 ). Mechanism of Cph1 phytochrome assembly from stopped-flow kinetics and circular dichroism . Biochemistry 48 , 6305 – 6317 . 10.1021/bi900436v 19496558
Borucki B. Seibeck S. Heyn M. P. Lamparter T. ( 2009 ). Characterization of the covalent and noncovalent adducts of Agp1 phytochrome assembled with biliverdin and phycocyanobilin by circular dichroism and flash photolysis . Biochemistry 42 , 13684 – 13697 . 10.1021/bi035511n 14622015
Burgie E. S. Bussell A. N. Walker J. M. Dubiel K. Vierstra R. D. ( 2014 ). Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome , Proc. Natl. Acad. Sci. U.S.A . 111 , 10179 – 10184 . 10.1073/pnas.1403096111 24982198
Dasgupta Y. J. Frontiera R. R. Taylor K. C. Lagarias J. C. Mathies R. A. ( 2009 ). Ultrafast excited state isomerization in phytochrome revealed by femtosecond stimulated raman spectroscopy . Proc. Natl. Acad. Sci. U.S.A . 106 , 1784 – 1789 . 10.1073/pnas.0812056106 19179399
Essen L. O. Hughes J. Mailliet J. ( 2008 ). The structure of a complete phytochrome sensory module in the Pr ground state . Proc. Natl. Acad. Sci. U.S.A . 105 , 14709 – 14714 . 10.1073/pnas.0806477105 18799745
Fodor S. P. A. Lagarias J. C. Mathies R. A. ( 1988 ). Resonance raman spectra of the pr-form of phytochrome . Photochem. Photobiol . 48 , 129 – 136 . 10.1111/j.1751-1097.1988.tb02797.x 3222324
Fodor S. P. A. Lagarias J. C. Mathies R. A. ( 1990 ). Resonance raman analysis of the Pr and Pfr forms of phytochrome . Biochemistry 29 , 11141 – 11146 . 10.1021/bi00502a018 2271702
Gärtner W. Braslavsky S. E. ( 2004 ). The phytochromes: spectroscopy and function , in Photoreceptors and Light Signalling , ed Batschauer A. ( Cambridge : Royal Society of Chemistry ), 136 – 180 .
Hahn J. Strauss H. M. Schmieder P. ( 2008 ). Heteronuclear NMR investigation on the structure and dynamics of the chromophore binding pocket of the cyanobacterial phytochrome Cph1 . J. Am. Chem. Soc . 130 , 11170 – 11178 . 10.1021/ja8031086 18642805
Kim P. W. Rockwell N. C. Freer L. H. Chung C. W. Martin S. S. Lagarias J. V. . ( 2013 ). Unraveling the primary isomerization dynamics in cyanobacterial phytochrome Cph1 with multipulse manipulations . J. Phys. Chem. Lett . 4 , 2605 – 2609 . 10.1021/jz401443q 24143267
Kim P. W. Rockwell N. C. Martin S. S. Lagarias J. V. Larsen D. S. ( 2014a ). Heterogeneous photodynamics of the Pfr state in the cyanobacterial phytochrome Cph1 . Biochemistry 53 , 4601-4611 . 10.1021/bi5005359 24940993
Kim P. W. Rockwell N. C. Martin S. S. Lagarias J. V. Larsen D. S. ( 2014b ). Dynamic inhomogeneity in the photodynamics of cyanobacterial phytochrome Cph1 . Biochemistry 53 , 2818-2826 . 10.1021/bi500108s 24742290
Kneip C. Hildebrandt P. Schlamann W. Braslavsky S. E. Mark F. Schaffner K. ( 1999 ). Protonation state and structural changes of the tetrapyrrole chromophore during the Pr → Pfr phototransformation of phytochrome. A resonance raman spectroscopic study . Biochemistry 38 , 15185 – 15192 . 10.1021/bi990688w 10563801
Kneip C. Mozley D. Hildebrandt P. Gärtner W. Braslavsky S. E. Schaffner K. ( 1997 ). Effect of chromophore exchange on the resonance raman spectra of recombinant phytochromes . FEBS Lett . 414 , 23 – 26 . 10.1016/S0014-5793(97)00969-1 9305725
Lagarias J. C. Rapoport H. ( 1980 ). Chromopeptides from phytochrome. The structure and linkage of the Pr form of the phytochrome chromophore . J. Am. Chem. Soc . 102 , 4821 – 4828 . 10.1021/ja00534a042
Lamparter T. Michael N. Mittmann F. Esteban B. ( 2002 ). Phytochrome from Agrobacterium tumefaciens has unusual spectral properties and reveals an N-terminal chromophore attachment site . Proc. Natl. Acad. Sci. U.S.A . 99 , 11628 – 11633 . 10.1073/pnas.152263999 12186972
Landgraf F. T. Forreiter C. Hurtado Pico A. Lamparter T. Hughes J. ( 2001 ). Recombinant holopyhtochrome in Escherichia coli . FEBS Lett . 508 , 459 – 462 . 10.1016/S0014-5793(01)02988-X 11728472
Linke M. Yang Y. Zienicke B. Hammam M. A. von Haimberger T. Zacarias A. . ( 2013 ). Electronic transitions and heterogeneity of the bacteriophytochrome Pr absorption band: an angle balanced polarization resolved femtosecond VIS pump-IR probe study . Biophys. J . 105 , 1756 – 1766 . 10.1016/j.bpj.2013.08.041 24138851
Makhynya Y. Hussain Z. Bauschlicher T. Schwinte P. Siebert F. Gärtner W. ( 2007 ). Synthesis of selectively 13 C-labelled bilin compounds . Eur. J. Org. Chem. 2007 1287 – 1293 . 10.1002/ejoc.200600677
Malliet J. Psakis G. Sineshchekov V. Essen L. O. Hughes J. ( 2011 ). Spectroscopy and a high-resolution crystal structure of Tyr-263 mutants of cyanobacterial phytochrome Cph1 . J. Mol. Biol . 413 , 115 – 127 . 10.1016/j.jmb.2011.08.023 21888915
Matysik J. Hildebrandt P. Schlamann W. Braslavsky S. E. Schaffner K. ( 1995 ). Fourier-Transform resonance raman spectroscopic study of the intermediate states of phytochrome . Biochemistry 34 , 10497 – 10507 . 10.1021/bi00033a023 7654704
Mizutani Y. Tokutomi S. Kitagawa T. ( 1994 ). Resonance Raman spectra of the intermediates in phototransformation of large phytochrome: deprotonation of the chromophore in the bleached intermediate . Biochemistry 33 , 153 – 158 . 10.1021/bi00167a020 8286333
Mozley D. Remberg A. Gärtner W. ( 1997 ). Large-scale generation of affinity-purified recombinant phytochrome chromopeptide . Photochem. Photobiol . 686 , 710 – 715 . 10.1111/j.1751-1097.1997.tb03211.x 9383995
Mroginski M. A. Kaminski S. von Stetten D. Ringsdorf S. Gärtner W. Essen L. O. . ( 2011b ). The structure of the chromophore binding pocket in the Pr state of plant phytochrome phyA . J. Phys. Chem. B 115 , 1220 – 1231 . 10.1021/jp108265h 21192668
Mroginski M. A. Murgida D. H. von Stetten D. Kneip C. Mark F. Hildebrandt P. ( 2004 ). Determination of the chromophore structures in the photoinduced reaction cycle of phytochrome . J. Am. Chem. Soc . 126 , 16734 – 16735 . 10.1021/ja043959l 15612706
Mroginski M. A. von Stetten D. Velazquez Escobar F. Strauss H. M. Kaminski S. Scheerer P. . ( 2009 ). Chromophore structure of cyanobacterial phytochrome Cph1 in the Pr state: reconciling structural and spectroscopic data by QM/MM calculations . Biophys. J . 96 , 4153 – 4163 . 10.1016/j.bpj.2009.02.029 19450486
Mroginski M. A. von Stetten D. Kaminski S. Velazquez Escobar F. Michael N. Daminelli-Widany G. ( 2011a ). Elucidating photoinduced structural changes in phytochromes by the combined application of resonance Raman spectroscopy and theoretical methods . J. Mol. Struct . 993 , 15 – 25 . 10.1016/j.molstruc.2011.02.038
Murgida D. H. von Stetten D. Hildebrandt P. Schwinté P. Siebert F. Sharda S. . ( 2007 ). The chromophore structures of the Pr state in plant and bacterial phytochromes . Biophys. J . 93 , 2410 – 2417 . 10.1529/biophysj.107.108092 17545245
Quail P. H. ( 1998 ). The phytochrome family: dissection of functional roles and signalling pathways among family members . Philos. Trans. R. Soc. B Biol. Sci . 353 , 1399 – 1403 . 9800202
Remberg A. Lindner I. Lamparter T. Hughes J. Kneip C. Hildebrandt P. . ( 1997 ). Spectral and light-induced kinetic characterization of a recombinant phytochrome of the cyanobacterium Synechocystis . Biochemistry 36 , 13389 – 13395 . 10.1021/bi971563z 9341232
Ren Z. Chan P. W. Y. Moffat K. Pai E. F. Royer W. E. Jr. Srajera V. . ( 2013 ). Resolution of structural heterogeneity in dynamic crystallography . Acta Cryst. D 69 , 946 – 959 . 10.1107/S0907444913003454 23695239
Robben M. Hahn J. Klein E. Lamparter T. Psakis G. Hughes J. . ( 2010 ). NMR spectroscopic investigation of mobility and hydrogen bonding of the chromophore in the binding pocket of phytochrome proteins . Chem. Phys. Chem . 11 , 1248 – 1257 . 10.1002/cphc.200900897 20340123
Rockwell N. C. Duanmu D. Martin S. S. Bachy C. Price D. C. Bhattacharya D. . ( 2014 ). Eukaryotic algal phytochromes span the visible spectrum . Proc. Natl. Acad. Sci. U.S.A . 111 , 3871 – 3876 . 10.1073/pnas.1401871111 24567382
Rockwell N. C. Lagarias J. C. ( 2010 ). A brief history of phytochromes . Chem. Phys. Chem 11 , 1172 – 1180 . 10.1002/cphc.200900894 20155775
Rockwell N. C. Shang L. Martin S. S. Lagarias J. C. ( 2009 ). Distinct classes of red/far-red photochemistry within the phytochrome superfamily . Proc. Natl. Acad. Sci. U.S.A . 106 , 6123 – 6127 . 10.1073/pnas.0902370106 19339496
Rockwell N. C. Su Y. Lagarias J. C. ( 2006 ). Phytochrome structure and signaling mechanisms . Annu. Rev. Plant. Biol . 57 , 837 – 858 . 10.1146/annurev.arplant.56.032604.144208 16669784
Rohmer T. Lang C. Hughes J. Essen L. O. Gärtner W. Matysik J. ( 2008 ). Light-induced chromophore activity and signal transduction in phytochromes observed by 13C and 15N magic angle spinning NMR . Proc. Natl. Acad. Sci. U.S.A . 105 , 15229 – 15234 . 10.1073/pnas.0805696105 18832155
Salewski J. Velazquez F. Kaminski S. von Stetten D. Keidel A. Rippers Y. . ( 2013 ). The structure of the biliverdin cofactor in the Pfr state of bathy and prototypical phytochromes . J. Biol. Chem . 288 , 16800 – 16814 . 10.1074/jbc.M113.457531 23603902
Schäfer E. Nagy F. ( 2006 ). Photomorphogenesis in Plants and Bacteria . Dordrecht : Springer .
Schmidt P. Gensch T. Remberg A. Gärtner W. Braslavsky S. E. Schaffner K. ( 1998 ). The complexity of the Pr to Pfr phototransformation kinetics is an intrinsic property of native phytochrome . Photochem. Photobiol . 68 , 754 – 761 .
Schumann C. Groß R. Wolf M. M. N. Michael N. Lamparter T. Diller R. ( 2008 ). Sub-picosecond mid-infrared spectroscopy of the Pfr reaction of phytochrome Agp1 from Agrobacterium tumefaciens . Biophys. J . 94 , 3189 – 3197 . 10.1529/biophysj.107.119297 18192363
Schwinté P. Foerstendorf H. Gärtner W. Mroginski M. A. Hildebrandt P. Siebert F. ( 2008 ). Fourier transform infrared studies of the photoinduced processes of phytochrome phyA using isotopically labelled chromophores and density functional theory calculations . Biophys. J . 95 , 1256 – 1267 . 10.1529/biophysj.108.131441 18390618
Schwinté P. Gärtner W. Sharda S. Mroginski M. A. Hildebrandt P. Siebert F. ( 2009 ). The photoreactions of recombinant phytochrome CphA from the cyanobacterium Calothrix. A low temperature UV-vis and FTIR study . Photochem. Photobiol . 85 , 239 – 249 . 10.1111/j.1751-1097.2008.00426.x 18764898
Sineshchekov V. ( 2004 ). Phytochrome A: functional diversity and polymorphism . Photochem. Photobiol. Sci . 3 , 596 – 607 . 10.1039/b315430k 15170491
Sineshchekov V. Hughes J. Hartmann E. Lamparter T. ( 1998 ). Fluorescence and photochemistry of recombinant phytochrome from the cyanobacterium Synechocystis . Photochem. Photobiol . 67 , 263 – 267 . 9487803
Song C. Essen L. O. Gärtner W. Hughes J. Matysik J. ( 2012 ). Solid-state NMR spectroscopic study of chromophore–protein interactions in the Pr ground state of plant Phytochrome A . Mol. Plant 5 , 698 – 715 . 10.1093/mp/sss017 22419823
Song C. Psakis G. Lang C. Mailliet J. Zaanen J. Gärtner W. ( 2011 ). Cooperative nature of phytochrome photoactivation . Biochemistry 50 , 10987 – 10989 . 22124256
Song C. Rohmer T. Tiersch M. Zaanen J. Hughes J. Matysik J. ( 2013 ). Solid-state NMR spectroscopy to probe photoactivation in canonical phytochromes . Photochem. Photobiol . 89 , 259 – 273 . 10.1111/php.12029 23216105
Takala H. Björling A. Berntsson O. Lehtivuori H. Niebling S. Hoernke M. . ( 2014 ). Signal amplification and transduction in phytochrome photosensors . Nature 509 , 245 – 248 . 10.1038/nature13310 24776794
Velazquez Escobar F. Piwowarski P. Salewski J. Michael N. Fernandez vLopez M. Rupp A. . ( 2015 ). A protonation-coupled feedback mechanism controls the signaling process in bathy phytochromes . Nat. Chem . 7 , 423 – 430 . 10.1038/nchem.2225 25901821
Wagner J. R. Brunzelle J. S. Forest K. T. Vierstra R. D. ( 2005 ). A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome . Nature 438 , 325 – 331 . 10.1038/nature04118 16292304
Wagner J. R. Zhang J. R. Brunzelle J. S. Vierstra R. D. Forest K. T. ( 2007 ). High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution . J. Biol. Chem . 282 , 12298 – 12309 . 10.1074/jbc.M611824200 17322301
Yang X. J. Kuk J. Moffat K. ( 2008 ). Crystal structure of Pseudomonas aeruginosa bacteriophyrochrome: photoconversion and signal transduction . Proc. Natl. Acad. Sci. U.S.A . 105 , 14715 – 14720 . 10.1073/pnas.0806718105 18799746
Yang X. J. Kuk J. Moffat K. ( 2009 ). Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome . Proc. Natl. Acad. Sci. U.S.A . 106 , 15639 – 15644 . 10.1073/pnas.0902178106 19720999
Yang X. J. Ren Z. Kuk J. Moffat K. ( 2011 ). Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome . Nature 479 , 428 – 432 . 10.1038/nature10506 22002602
Yang X. J. Stojkovic E. A. Kuk J. Moffatt K. ( 2007 ). Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion . Proc. Natl. Acad. Sci. U.S.A . 104 , 12571 – 12576 . 10.1073/pnas.0701737104 17640891
Yang Y. Linke M. von Haimberger T. Hahn J. Matute R. Gonzalez L. . ( 2012 ). Real-time tracking of phytochrome's orientational changes during Pr photoisomerization . J. Am. Chem. Soc . 134 , 1408 – 1411 . 10.1021/ja209413d 22229806
Zhang J. Stankey R. J. Vierstra R. D. ( 2013 ). Structure-guided engineering of plant Phytochrome B with altered photochemistry and light signaling . Plant Physiol . 161 , 1454 – 1457 . 10.1104/pp.112.208892 23321421
Zienicke B. Molina I. Glenz R. Singer P. Ehmer D. Velazquez Escobar F. . ( 2013 ). Unusual spectral properties of bacteriophytochrome Agp2 result from a deprotonation of the chromophore in the red-absorbing form Pr . J. Biol. Chem . 288 , 31738 – 31751 . 10.1074/jbc.M113.479535 24036118
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