최소 단어 이상 선택하여야 합니다.
최대 10 단어까지만 선택 가능합니다.
다음과 같은 기능을 한번의 로그인으로 사용 할 수 있습니다.
NTIS 바로가기Freshwater biology, v.65 no.3, 2020년, pp.446 - 459
Guivier, Emmanuel (RECOVER, Aix Marseille Univ, Irstea, Marseille, France) , Pech, Nicolas (RECOVER, Aix Marseille Univ, Irstea, Marseille, France) , Chappaz, Rémi (RECOVER, Aix Marseille Univ, Irstea, Marseille, France) , Gilles, André (RECOVER, Aix Marseille Univ, Irstea, Marseille, France)
AbstractThe close relationships between hosts and their microbiota underlie the current concept of holobionts. This biological entity enlarges our perception of the genomic diversity supported by individuals/species and the potential abilities of hosts to respond to the environment.We investigated a...
Alberdi, Antton, Aizpurua, Ostaizka, Bohmann, Kristine, Zepeda-Mendoza, Marie Lisandra, Gilbert, M. Thomas P.. Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?. Trends in ecology & evolution, vol.31, no.9, 689-699.
Amato, Katherine R, Sanders, Jon G, Song, Se Jin, Nute, Michael, Metcalf, Jessica L, Thompson, Luke R, Morton, James T, Amir, Amnon, McKenzie, Valerie J, Humphrey, Gregory, Gogul, Grant, Gaffney, James, Baden, Andrea L, Britton, Gillian A O, Cuozzo, Frank P, Di Fiore, Anthony, Dominy, Nathaniel J, Goldberg, Tony L, Gomez, Andres, Kowalewski, Martin M, Lewis, Rebecca J, Link, Andres, Sauther, Michelle L, Tecot, Stacey, White, Bryan A, Nelson, Karen E, Stumpf, Rebecca M, Knight, Rob, Leigh, Steven R. Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes. The ISME journal : multidisciplinary journal of microbial ecology, vol.13, no.3, 576-587.
Amato, Katherine R., Leigh, Steven R., Kent, Angela, Mackie, Roderick I., Yeoman, Carl J., Stumpf, Rebecca M., Wilson, Brenda A., Nelson, Karen E., White, Bryan A., Garber, Paul A.. The Gut Microbiota Appears to Compensate for Seasonal Diet Variation in the Wild Black Howler Monkey (Alouatta pigra). Microbial ecology, vol.69, no.2, 434-443.
Bano, Nasreen, deRae Smith, Angelique, Bennett, William, Vasquez, Lydia, Hollibaugh, James T.. Dominance of Mycoplasma in the guts of the Long-Jawed Mudsucker, Gillichthys mirabilis, from five California salt marshes. Environmental microbiology, vol.9, no.10, 2636-2641.
Benhamed, S., Guardiola, F.A., Mars, M., Esteban, M.A.. Pathogen bacteria adhesion to skin mucus of fishes. Veterinary microbiology, vol.171, no.1, 1-12.
Benjamini, Yoav, Hochberg, Yosef. Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. Journal of the Royal Statistical Society. Series B (Methodological), vol.57, no.1, 289-300.
Bolnick, Daniel I., Snowberg, Lisa K., Hirsch, Philipp E., Lauber, Christian L., Org, Elin, Parks, Brian, Lusis, Aldons J., Knight, Rob, Caporaso, J. Gregory, Svanbäck, Richard. Individual diet has sex-dependent effects on vertebrate gut microbiota. Nature communications, vol.5, 4500-.
Bolyen, Evan, Rideout, Jai Ram, Dillon, Matthew R., Bokulich, Nicholas A., Abnet, Christian C., Al-Ghalith, Gabriel A., Alexander, Harriet, Alm, Eric J., Arumugam, Manimozhiyan, Asnicar, Francesco, Bai, Yang, Bisanz, Jordan E., Bittinger, Kyle, Brejnrod, Asker, Brislawn, Colin J., Brown, C. Titus, Callahan, Benjamin J., Caraballo-Rodríguez, Andrés Mauricio, Chase, John, Cope, Emily K., Da Silva, Ricardo, Diener, Christian, Dorrestein, Pieter C., Douglas, Gavin M., Durall, Daniel M., Duvallet, Claire, Edwardson, Christian F., Ernst, Madeleine, Estaki, Mehrbod, Fouquier, Jennifer, Gauglitz, Julia M., Gibbons, Sean M., Gibson, Deanna L., Gonzalez, Antonio, Gorlick, Kestrel, Guo, Jiarong, Hillmann, Benjamin, Holmes, Susan, Holste, Hannes, Huttenhower, Curtis, Huttley, Gavin A., Janssen, Stefan, Jarmusch, Alan K., Jiang, Lingjing, Kaehler, Benjamin D., Kang, Kyo Bin, Keefe, Christopher R., Keim, Paul, Kelley, Scott T., Knights, . Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nature biotechnology, vol.37, no.9, 1091-1091.
Bordenstein, Seth R., Theis, Kevin R.. Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes. PLoS biology, vol.13, no.8, e1002226-.
Boutin, Sébastien, Sauvage, Christopher, Bernatchez, Louis, Audet, Céline, Derome, Nicolas. Inter Individual Variations of the Fish Skin Microbiota: Host Genetics Basis of Mutualism?. PloS one, vol.9, no.7, e102649-.
BROOKS, B. W., MURRAY, R. G. E.. Nomenclature for "Micrococcus radiodurans" and Other Radiation-Resistant Cocci: Deinococcaceae fam. nov. and Deinococcus gen. nov., Including Five Species. International journal of systematic bacteriology, vol.31, no.3, 353-360.
Callahan, Benjamin J, McMurdie, Paul J, Rosen, Michael J, Han, Andrew W, Johnson, Amy Jo A, Holmes, Susan P. DADA2: High resolution sample inference from Illumina amplicon data. Nature methods, vol.13, no.7, 581-583.
Carrier, Tyler J., Reitzel, Adam M.. The Hologenome Across Environments and the Implications of a Host-Associated Microbial Repertoire. Frontiers in microbiology, vol.8, 802-.
Chiarello, Marlène, Auguet, Jean-Christophe, Bettarel, Yvan, Bouvier, Corinne, Claverie, Thomas, Graham, Nicholas A. J., Rieuvilleneuve, Fabien, Sucré, Elliot, Bouvier, Thierry, Villéger, Sébastien. Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet. Microbiome, vol.6, no.1, 147-.
Le “barcoding alimentaire”: Développement d’un nouvel outil d’écologie moléculaire pour les milieux d’eau douce. Exemple au travers de l’étude de la zone hybride Durance entre les deux Chondrostomes français Corse E.
Corse, Emmanuel, Pech, Nicolas, Sinama, Melthide, Costedoat, Caroline, Chappaz, Rémi, Gilles, André. When Anthropogenic River Disturbance Decreases Hybridisation between Non-Native and Endemic Cyprinids and Drives an Ecomorphological Displacement towards Juvenile State in Both Species. PloS one, vol.10, no.11, e0142592-.
Donaldson, Gregory P., Lee, S. Melanie, Mazmanian, Sarkis K.. Gut biogeography of the bacterial microbiota. Nature reviews. Microbiology, vol.14, no.1, 20-32.
Draghi II, Andrew, Popov, Vsevolod L., Kahl, Melissa M., Stanton, James B., Brown, Corrie C., Tsongalis, Gregory J., West, A. Brian, Frasca Jr., Salvatore. Characterization of “ Candidatus Piscichlamydia salmonis” (Order Chlamydiales ), a Chlamydia-Like Bacterium Associated With Epitheliocystis in Farmed Atlantic Salmon ( Salmo salar ). Journal of clinical microbiology, vol.42, no.11, 5286-5297.
Hydrobiologia Filipe A. F. 331 719 2013 Vulnerability of stream biota to climate change in Mediterranean climate regions: A synthesis of ecological responses and conservation challenges
Fuhrman, Jed A.. Microbial community structure and its functional implications. Nature, vol.459, no.7244, 193-199.
Galan, Maxime, Razzauti, Maria, Bard, Emilie, Bernard, Maria, Brouat, Carine, Charbonnel, Nathalie, Dehne-Garcia, Alexandre, Loiseau, Anne, Tatard, Caroline, Tamisier, Lucie, Vayssier-Taussat, Muriel, Vignes, Helene, Cosson, Jean-François. 16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in Wildlife. mSystems, vol.1, no.4, e00032-16-.
Gould, Alison L., Zhang, Vivian, Lamberti, Lisa, Jones, Eric W., Obadia, Benjamin, Korasidis, Nikolaos, Gavryushkin, Alex, Carlson, Jean M., Beerenwinkel, Niko, Ludington, William B.. Microbiome interactions shape host fitness. Proceedings of the National Academy of Sciences of the United States of America, vol.115, no.51, E11951-E11960.
Guevara Soto, Maricruz, Vidondo, Beatriz, Vaughan, Lloyd, Seth-Smith, Helena M. B., Nufer, Lisbeth, Segner, Helmut, Rubin, Jean-Francois, Schmidt-Posthaus, Heike. The emergence of epitheliocystis in the upper Rhone region: evidence for Chlamydiae in wild and farmed salmonid populations. Archives of microbiology, vol.198, no.4, 315-324.
Guivier, Emmanuel, Gilles, André, Pech, Nicolas, Duflot, Nicolas, Tissot, Laurence, Chappaz, Rémi. Canals as ecological corridors and hybridization zones for two cyprinid species. Hydrobiologia, vol.830, no.1, 1-16.
Guivier, Emmanuel, Martin, Jean-François, Pech, Nicolas, Ungaro, Arnaud, Chappaz, Rémi, Gilles, André. Microbiota Diversity Within and Between the Tissues of Two Wild Interbreeding Species. Microbial ecology, vol.75, no.3, 799-810.
Hao, Yao Tong, Wu, Shan Gong, Jakovlić, Ivan, Zou, Hong, Li, Wen Xiang, Wang, Gui Tang. Impacts of diet on hindgut microbiota and short‐chain fatty acids in grass carp (Ctenopharyngodon idellus). Aquaculture research, vol.48, no.11, 5595-5605.
Hao, Yao Tong, Wu, Shan Gong, Xiong, Fan, Tran, Ngoc T., Jakovlić, Ivan, Zou, Hong, Li, Wen Xiang, Wang, Gui Tang. Succession and Fermentation Products of Grass Carp ( Ctenopharyngodon idellus ) Hindgut Microbiota in Response to an Extreme Dietary Shift. Frontiers in microbiology, vol.8, 1585-.
Holben, W.E., Williams, P., Saarinen, M., Särkilahti, L.K., Apajalahti, J.H.A.. Phylogenetic Analysis of Intestinal Microflora Indicates a Novel Mycoplasma Phylotype in Farmed and Wild Salmon. Microbial ecology, vol.44, no.2, 175-185.
The IUCN Red List of Threatened Species. Version 2018-1 IUCN 2018
Kashinskaya, E.N., Simonov, E.P., Kabilov, M.R., Izvekova, G.I., Andree, K.B., Solovyev, M.M.. Diet and other environmental factors shape the bacterial communities of fish gut in an eutrophic lake. Journal of applied microbiology, vol.125, no.6, 1626-1641.
Kozich, James J., Westcott, Sarah L., Baxter, Nielson T., Highlander, Sarah K., Schloss, Patrick D.. Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform. Applied and environmental microbiology, vol.79, no.17, 5112-5120.
Langille, Morgan G. I., Zaneveld, Jesse, Caporaso, J. Gregory, McDonald, Daniel, Knights, Dan, Reyes, Joshua A., Clemente, Jose C., Burkepile, Deron E., Vega Thurber, Rebecca L., Knight, Rob, Beiko, Robert G., Huttenhower, Curtis. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nature biotechnology, vol.31, no.9, 814-821.
Li, Peng, Yin, Yu-Long, Li, Defa, Woo Kim, Sung, Wu, Guoyao. Amino acids and immune function. The British journal of nutrition, vol.98, no.2, 237-252.
Li, Xuemei, Yan, Qingyun, Ringø, Einar, Wu, Xingbing, He, Yongfeng, Yang, Deguo. The influence of weight and gender on intestinal bacterial community of wild largemouth bronze gudgeon ( Coreius guichenoti , 1874). BMC microbiology, vol.16, 191-.
Liu, Han, Guo, Xianwu, Gooneratne, Ravi, Lai, Ruifang, Zeng, Cong, Zhan, Fanbin, Wang, Weimin. The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels. Scientific reports, vol.6, 24340-.
Louca, Stilianos, Doebeli, Michael, Parfrey, Laura Wegener. Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem. Microbiome, vol.6, no.1, 41-.
Lowrey, Liam, Woodhams, Douglas C., Tacchi, Luca, Salinas, Irene. Topographical Mapping of the Rainbow Trout (Oncorhynchus mykiss) Microbiome Reveals a Diverse Bacterial Community with Antifungal Properties in the Skin. Applied and environmental microbiology, vol.81, no.19, 6915-6925.
Lozupone, Catherine, Knight, Rob. UniFrac: a New Phylogenetic Method for Comparing Microbial Communities. Applied and environmental microbiology, vol.71, no.12, 8228-8235.
Mandal, Siddhartha, Van Treuren, Will, White, Richard A., Eggesbø, Merete, Knight, Rob, Peddada, Shyamal D.. Analysis of composition of microbiomes: a novel method for studying microbial composition. Microbial ecology in health and disease, vol.26, 10.3402/mehd.v26.27663-.
vegan: Community ecology package. R package version 2.4‐1 Oksanen J. 2016
Paliy, O., Shankar, V.. Application of multivariate statistical techniques in microbial ecology. Molecular ecology, vol.25, no.5, 1032-1057.
Parks, Donovan H., Tyson, Gene W., Hugenholtz, Philip, Beiko, Robert G.. STAMP: statistical analysis of taxonomic and functional profiles. Bioinformatics, vol.30, no.21, 3123-3124.
Pratte, Zoe A., Besson, Marc, Hollman, Rebecca D., Stewart, Frank J.. The Gills of Reef Fish Support a Distinct Microbiome Influenced by Host-Specific Factors. Applied and environmental microbiology, vol.84, no.9, e00063-18-e00063-18.
Price, Morgan N., Dehal, Paramvir S., Arkin, Adam P.. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments. PloS one, vol.5, no.3, e9490-.
Quast, Christian, Pruesse, Elmar, Yilmaz, Pelin, Gerken, Jan, Schweer, Timmy, Yarza, Pablo, Peplies, Jörg, Glöckner, Frank Oliver. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic acids research, vol.41, no.d1, D590-D596.
R: A language and environment for statistical computing R Core Team 2016
Read, Daniel S, Gweon, Hyun S, Bowes, Michael J, Newbold, Lindsay K, Field, Dawn, Bailey, Mark J, Griffiths, Robert I. Catchment-scale biogeography of riverine bacterioplankton. The ISME journal : multidisciplinary journal of microbial ecology, vol.9, no.2, 516-526.
Salinas, Irene. The Mucosal Immune System of Teleost Fish. Biology, vol.4, no.3, 525-539.
Sellyei, Boglárka, Molnár, Kálmán, Székely, Csaba. Diverse Chlamydia-like agents associated with epitheliocystis infection in two cyprinid fish species, the common carp (Cyprinus carpio L.) and the gibel carp (Carassius auratus gibelio L.). Acta veterinaria Hungarica, vol.65, no.1, 29-40.
Sevellec, Maelle, Derome, Nicolas, Bernatchez, Louis. Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs. Microbiome, vol.6, no.1, 47-.
Šimková, Andrea, Civáňová, Kristína, Gettová, Lenka, Gilles, André. Genomic Porosity between Invasive Chondrostoma nasus and Endangered Endemic Parachondrostoma toxostoma (Cyprinidae): The Evolution of MHC IIB Genes. PloS one, vol.8, no.6, e65883-.
Simon, Jean-Christophe, Marchesi, Julian R., Mougel, Christophe, Selosse, Marc-André. Host-microbiota interactions: from holobiont theory to analysis. Microbiome, vol.7, no.1, 5-.
Sylvain, François-Étienne, Cheaib, Bachar, Llewellyn, Martin, Gabriel Correia, Tiago, Barros Fagundes, Daniel, Luis Val, Adalberto, Derome, Nicolas. pH drop impacts differentially skin and gut microbiota of the Amazonian fish tambaqui ( Colossoma macropomum ). Scientific reports, vol.6, 32032-.
Tarnecki, Andrea M., Brennan, Nathan P., Schloesser, Ryan W., Rhody, Nicole R.. Shifts in the Skin-Associated Microbiota of Hatchery-Reared Common Snook Centropomus undecimalis During Acclimation to the Wild. Microbial ecology, vol.77, no.3, 770-781.
Tremaroli, Valentina, B채ckhed, Fredrik. Functional interactions between the gut microbiota and host metabolism. Nature, vol.489, no.7415, 242-249.
Uren Webster, Tamsyn M., Consuegra, Sofia, Hitchings, Matthew, Garcia de Leaniz, Carlos. Interpopulation Variation in the Atlantic Salmon Microbiome Reflects Environmental and Genetic Diversity. Applied and environmental microbiology, vol.84, no.16, e00691-18-.
Ursell, L.K., Clemente, J.C., Rideout, J.R., Gevers, D., Caporaso, J.G., Knight, R.. The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites. The Journal of allergy and clinical immunology : official organ of American Academy of Allergy, vol.129, no.5, 1204-1208.
V철r철smarty, C. J., McIntyre, P. B., Gessner, M. O., Dudgeon, D., Prusevich, A., Green, P., Glidden, S., Bunn, S. E., Sullivan, C. A., Liermann, C. Reidy, Davies, P. M.. Global threats to human water security and river biodiversity. Nature, vol.467, no.7315, 555-561.
Wang, An R., Ran, Chao, Ringø, Einar, Zhou, Zhi G.. Progress in fish gastrointestinal microbiota research. Reviews in aquaculture, vol.10, no.3, 626-640.
Wang, Qiong, Garrity, George M., Tiedje, James M., Cole, James R.. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy. Applied and environmental microbiology, vol.73, no.16, 5261-5267.
Wang, An R., Ran, Chao, Ringø, Einar, Zhou, Zhi G.. Progress in fish gastrointestinal microbiota research. Reviews in aquaculture, vol.10, no.3, 626-640.
Weiss, Sophie, Xu, Zhenjiang Zech, Peddada, Shyamal, Amir, Amnon, Bittinger, Kyle, Gonzalez, Antonio, Lozupone, Catherine, Zaneveld, Jesse R., Vázquez-Baeza, Yoshiki, Birmingham, Amanda, Hyde, Embriette R., Knight, Rob. Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome, vol.5, no.1, 27-.
Bacteriology of humans: An ecological perspective Wilson M. 2008
Xing, Mengxin, Hou, Zhanhui, Yuan, Jianbo, Liu, Yuan, Qu, Yanmei, Liu, Bin. Taxonomic and functional metagenomic profiling of gastrointestinal tract microbiome of the farmed adult turbot (Scophthalmus maximus). FEMS microbiology ecology, vol.86, no.3, 432-443.
Yan, Qingyun, Li, Jinjin, Yu, Yuhe, Wang, Jianjun, He, Zhili, Van Nostrand, Joy D., Kempher, Megan L., Wu, Liyou, Wang, Yaping, Liao, Lanjie, Li, Xinghao, Wu, Shu, Ni, Jiajia, Wang, Chun, Zhou, Jizhong. Environmental filtering decreases with fish development for the assembly of gut microbiota. Environmental microbiology, vol.18, no.12, 4739-4754.
*원문 PDF 파일 및 링크정보가 존재하지 않을 경우 KISTI DDS 시스템에서 제공하는 원문복사서비스를 사용할 수 있습니다.
저자가 공개 리포지터리에 출판본, post-print, 또는 pre-print를 셀프 아카이빙 하여 자유로운 이용이 가능한 논문
※ AI-Helper는 부적절한 답변을 할 수 있습니다.