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Method and apparatus for detection of fluorescently labeled materials 원문보기

IPC분류정보
국가/구분 United States(US) Patent 등록
국제특허분류(IPC7판)
  • G01J-003/30
출원번호 US-0195889 (1994-02-10)
발명자 / 주소
  • Stern David (Mt. View CA) Fiekowsky Peter (Los Altos CA)
출원인 / 주소
  • Affymetrix, Inc. (Santa Clara CA 02)
인용정보 피인용 횟수 : 421  인용 특허 : 8

초록

Fluorescently marked targets bind to a substrate 230 synthesized with polymer sequences at known locations. The targets are detected by exposing selected regions of the substrate 230 to light from a light source 100 and detecting the photons from the light fluoresced therefrom, and repeating the ste

대표청구항

An apparatus for detecting fluorescently marked regions on a first surface of a substrate, said apparatus comprising: an excitation light source; an optical train for directing an excitation light from said excitation light source at said substrate, and separating reflected excitation light from sai

이 특허에 인용된 특허 (8)

  1. Elings, Virgil B.; Nicoli, David F., Apparatus and method for homogeneous immunoassay.
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  7. Mathies Richard A. (Contra Costa CA) Peck Konan (Contra Costa CA), Laser excited confocal microscope fluorescence scanner and method.
  8. Abu-Shumays Ahmad (Los Altos CA), Thermostatable flow cell for fluorescence measurements.

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  184. Bassler, Michael; Kiesel, Peter; Schmidt, Oliver; Johnson, Noble M., Method and system implementing spatially modulated excitation or emission for particle characterization with enhanced sensitivity.
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  186. Gulati, Sandeep, Method and system using active signal processing for repeatable signal amplification in dynamic noise backgrounds.
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  193. Hong, Kyeong Man, Method for measuring chromosome, gene or specific nucleotide sequence copy numbers using SNP array.
  194. Pantoliano Michael W. ; Bone Roger F. ; Rhind Alexander W. ; Salemme Francis R., Method for sensing and processing fluorescence data from multiple samples.
  195. Bridgham, John; Corcoran, Kevin; Golda, George; Pallas, Michael C.; Brenner, Sydney, Method for sequential sequencing nucleic acids.
  196. Wilson, S. Brian; Dranoff, Glenn; Gillessen, Silke, Method of attenuating reactions to skin irritants.
  197. Williams, Peter, Method of determining the nucleotide sequence of oligonucleotides and DNA molecules.
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  204. Williams, Peter; Williams, Daniel J. B.; Bloom, Linda; Taylor, Thomas J., Method of determining the nucleotide sequence of oligonucleotides and DNA molecules.
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  206. Engelhardt, Johann, Method of finding, recording and evaluating object structures.
  207. Darnell, Robert; Jensen, Kirk; Ule, Jernej, Method of purifying RNA binding protein-RNA complexes.
  208. Salafsky, Joshua S., Method using a nonlinear optical technique for detection of interactions involving a conformational change.
  209. Roth, Shmuel; Ben-David, Ilan; Ben-Chorin, Moshe, Method, device and system for multi-color sequential LCD panel.
  210. Quake, Stephen; Unger, Marc, Methods and apparatus for analyzing polynucleotide sequences.
  211. Quake, Stephen; Volkmuth, Wayne; Unger, Marc, Methods and apparatus for analyzing polynucleotide sequences.
  212. Quake,Stephen; Braslavsky,Ido; Hebert,Benedict; Kartalov,Emil, Methods and apparatus for analyzing polynucleotide sequences by asynchronous base extension.
  213. French Todd E. ; Modlin Douglas N. ; Owicki John C. ; Richey James S. ; Leytes Lev J. ; Razvi Enal S., Methods and apparatus for detecting nucleic acid polymorphisms.
  214. Stern, David; Fiekowsky, Peter, Methods and apparatus for detection of fluorescently labeled materials.
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  216. Goldberg Martin J. ; Yelagalawadi Govinda Rao S. ; Tanimoto Eugene Yuji ; Tran Huu Minh ; Dong Helin ; Lockhart David ; Ryder Thomas B. ; Warrington Janet A. ; Beecher Jody, Methods and compositions for amplifying detectable signals in specific binding assays.
  217. Goldberg, Martin J.; Yelagalawadi, Govinda Rao S.; Tanimoto, Eugene Yuji; Tran, Huu Minh; Dong, Helin; Lockhart, David; Ryder, Thomas B.; Warrington, Janet A.; Beecher, Jody, Methods and compositions for amplifying detectable signals in specific binding assays.
  218. Gupta, Soumi; Fransen, Signe; Paxinos, Ellen; Parkin, Neil T., Methods and compositions for determining altered susceptibility of HIV-1 to anti-HIV drugs.
  219. Parkin, Neil T.; Coakley, Eoin, Methods and compositions for determining hypersusceptibility of HIV-1 to non-nucleoside reverse transcriptase inhibitors.
  220. Pearce, Christopher D. J.; Mitchell, Lloyd G., Methods and compositions for determining the purity of and purifying chemically synthesized nucleic acids.
  221. Drmanac,Radoje, Methods and compositions for efficient nucleic acid sequencing.
  222. Radoje Drmanac, Methods and compositions for efficient nucleic acid sequencing.
  223. Buzby,Philip Richard, Methods and compositions for improving fidelity in a nucleic acid synthesis reaction.
  224. Reams, Romonia Renee, Methods and compositions for prostate cancer metastasis.
  225. Reams, Romonia Renee, Methods and compositions for prostate cancer metastasis.
  226. Harris, Timothy; Buzby, Philip Richard; Jarosz, Mirna; DiMeo, James Joseph; Gill, Jaime, Methods and devices for nucleic acid sequence determination.
  227. Stern, David, Methods and devices for reading microarrays.
  228. Stern, David; Gao, Chuan; Yamamoto, Melvin; Nguyen, Devin, Methods and devices for reading microarrays.
  229. Stern, David; Gao, Chuan; Yamamoto, Melvin; Nguyen, Devin, Methods and devices for reading microarrays.
  230. Quake, Stephen, Methods and kits for analyzing polynucleotide sequences.
  231. Lundquist, Paul; Turner, Stephen; Zaccarin, Denis, Methods and systems for monitoring multiple optical signals from a single source.
  232. Zhou, Wei; Mei, Rui; Crnogorac, Filip; Liao, Guochun; Lucas, Julian, Methods and systems for sequencing long nucleic acids.
  233. Zhou, Wei; Mei, Rui; Matsuzaki, Hajime, Methods and systems for sequencing long nucleic acids.
  234. Lundquist, Paul; Zaccarin, Denis; Lacroix, Yves; Maxham, Mark; Foquet, Mathieu; Turner, Stephen, Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources.
  235. Lundquist, Paul; Zaccarin, Denis; Lacroix, Yves; Maxham, Mark; Foquet, Mathieu; Turner, Stephen, Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources.
  236. Lundquist, Paul; Zaccarin, Denis; Lacroix, Yves; Maxham, Mark; Foquet, Mathieu; Turner, Stephen, Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources.
  237. Lundquist, Paul; Zaccarin, Denis; Lacroix, Yves; Turner, Stephen; Dixon, John, Methods and systems for simultaneous real-time monitoring of optical signals from multiple sources.
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  241. McGall,Glenn; Kajisa,Lisa; Kreger,Bradley A, Methods for array preparation using substrate rotation.
  242. Golub, Todd R.; Lander, Eric S.; Mesirov, Jill; Slonim, Donna; Tamayo, Pablo, Methods for classifying samples and ascertaining previously unknown classes.
  243. Golub,Todd R.; Lander,Eric S.; Mesirov,Jill; Slonim,Donna; Tamayo,Pablo, Methods for classifying samples and ascertaining previously unknown classes.
  244. , Methods for detecting and diagnosing oral cancer.
  245. Parkin, Neil T.; Coakley, Eoin, Methods for determining hypersusceptibility of HIV-1 to non-nucleoside reverse transcriptase inhibitors.
  246. Huang, Wei, Methods for determining resistance or susceptibility to HIV entry inhibitors.
  247. Zuzan,Harry; Johnson,Valen E., Methods for estimating probe cell locations in high-density synthetic DNA microarrays.
  248. Huang, Jing; Jones, Keith W., Methods for high throughput genotyping.
  249. Huang, Jing; Jones, Keith W., Methods for high throughput genotyping.
  250. Huang, Jing; Jones, Keith W., Methods for high throughput genotyping.
  251. McGall, Glenn; Kajisa, Lisa; Trulson, Mark, Methods for improved array preparation.
  252. Goldberg, Martin J.; Diggelman, Martin; Hubbell, Earl A.; McGall, Glenn H.; Ngo, Nam Quoc; Morris, MacDonald; Yamamoto, Melvin; Tan, Jennifer; Rava, Richard P., Methods for photolithographic synthesis of polymer arrays utilizing anti-reflective coatings.
  253. Tamayo,Pablo; Staunton,Jane E.; Slonim,Donna K.; Coller,Hilary A.; Golub,Todd R.; Lander,Eric S.; Mesirov,Jill P., Methods for predicting chemosensitivity or chemoresistance.
  254. Bouzek, Heather K., Methods for preparation of nucleic acid-containing samples using clay minerals and alkaline solutions.
  255. Dale, Roderic M. K., Methods for production of arrays with modified oligonucleotide and polynucleotide compositions.
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  257. Jen, Jin; Beaudry, Gary A.; Madden, Stephen L.; Bertlesen, Arthur H.; Sidransky, David, Methods for the diagnosis and treatment of lung cancer.
  258. Jen, Jin; Beaudry, Gary A.; Madden, Stephen L.; Bertlesen, Arthur H.; Sidransky, David, Methods for the diagnosis and treatment of lung cancer.
  259. Cerrina, Francesco; Sussman, Michael R.; Blattner, Frederick R.; Singh-Gasson, Sangeet; Green, Roland, Methods for the synthesis of arrays of DNA probes.
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  261. Delenstarr, Glenda C., Methods of identifying heterogeneous features in an image of an array.
  262. Zhou, Wei; Mei, Rui; Matsuzaki, Hajime, Methods of targeted sequencing.
  263. Sywe, Bei-Shen; Borodkin, Mark; Gao, Chuan; Ilkova, Liana; Nguyen, Devin, Methods, systems and apparatuses for testing and calibrating fluorescent scanners.
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  289. Salafsky, Joshua S., Nonlinear optical detection of molecules comprising an unnatural amino acid possessing a hyperpolarizability.
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  293. Liu,David R., Nucleotide analogs.
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  344. Vigneault, Francois; Briggs, Adrian Wrangham, Single cell bar-coding for antibody discovery.
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  348. Demers,James Paul, Spatially addressable combinatorial chemical arrays in encoded optical disk format.
  349. Ben Chorin,Moshe; Ben David,Ilan, Spectrally matched print proofer.
  350. Ben-Chorin, Moshe; Ben-David, Ilan, Spectrally matched print proofer.
  351. Buzby,Philip Richard, Stabilizing a nucleic acid for nucleic acid sequencing.
  352. Malka, Doron; Ben-Chorin, Moshe, Sub-pixel rendering of a multiprimary image.
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  355. Zhong, Cheng Frank; Lundquist, Paul; Foquet, Mathieu; Korlach, Jonas; Bayandorian, Hovig, Substrates and optical system having at least one optical waveguide, at least one nanometer-scale aperture and at least one lens array and methods of use thereof.
  356. Zhong, Cheng Frank; Lundquist, Paul; Foquet, Mathieu; Korlach, Jonas; Bayandorian, Hovig, Substrates and optical systems and methods of use thereof having a single optically resolvable immobilized reaction component disposed within a nanometer-scale aperture.
  357. Lundquist, Paul; Turner, Stephen, Substrates, systems and methods for analyzing materials.
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  367. Golovkina, Viktoriya N.; Cerrina, Franco, Synthesis of arrays of oligonucleotides and other chain molecules.
  368. Bridgham, John; Corcoran, Kevin; Golda, George; Brenner, Sydney; Pallas, Michael C., System and apparatus for sequential processing of analytes.
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  370. Bridgham, John; Corcoran, Kevin; Golda, George; Pallas, Michael C.; Brenner, Sydney, System and apparatus for sequential processing of analytes.
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  374. Gulati,Sandeep, System and method for characterizing microarray output data.
  375. Weiner, Nathan K.; Odoy, Patrick J.; Schultz, Eric; Jones, Mark; Overbeck, James T.; DeWeerd, Herman; Stura, David A.; Bukys, Albert K.; Woolaver, Tim J.; Regan, Thomas P.; Bradbury, David; McKenzie, Eric E.; DiPaolo, Roger; Miles, Christopher; Katz, Joel M.; Ksenia, Oleinik-Ovod, System and method for scanning of probe arrays.
  376. Stern David, System and methods for detection of labeled materials.
  377. Goldberg, Martin J.; Diggelman, Martin; Hubbell, Earl A.; McGall, Glenn H.; Nam, Ngo; Morris, MacDonald S.; Yamamoto, Melvin; Tan, Jennifer; Rava, Richard, System for photolithographic synthesis of polymer arrays.
  378. Meijles, Peter, System, method and apparatus for calibrating inspection tools.
  379. Hubbell, Earl A.; Cawley, Simon, System, method, and computer software product for genotype determination using probe array data.
  380. Hubbell, Earl A.; Cawley, Simon, System, method, and computer software product for genotype determination using probe array data.
  381. Kaushikkar, Shantanu V.; Patil, Sangita B., System, method, and computer software product for grid alignment of multiple scanned images.
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  383. Weiner,Nathan K.; Honkanen,Peter D.; Woolaver,Timothy J., System, method, and product for dynamic noise reduction in scanning of biological material.
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  386. Kaiser, Michael D.; Smith, David R., System, method, and product for imaging probe arrays with small feature size.
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  388. Kaiser, Michael D.; Smith, David R., System, method, and product for imaging probe arrays with small feature sizes.
  389. Odoy, Patrick J.; Woolaver, Timothy J., System, method, and product for pixel clocking in scanning of biological materials.
  390. Weiner, Nathan K.; Odoy, Patrick J.; Schultz, Eric; Jones, Mark; Overbeck, James T.; DeWeerd, Herman; Stura, David A.; Bukys, Albert K.; Woolaver, Tim J.; Regan, Thomas P.; Bradbury, David; McKenzie, Eric E.; DiPaolo, Roger; Miles, Christopher; Katz, Joel M.; Oleinik-Ovod, Ksenia, System, method, and product for scanning of biological materials.
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  394. Kaiser,Michael D., System, method, and product for scanning of biological materials employing dual analog integrators.
  395. Weiner, Nathan K., System, method, and product for symmetrical filtering in scanning of biological materials.
  396. Pascual, Maria Virginia; Banchereau, Jacques F.; Bennett, Lynda B., Systemic lupus erythematosus diagnostic assay.
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  400. Hasson, Kenton C., Systems and methods for monitoring the amplification of DNA.
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