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Method and apparatus for providing a bioinformatics database 원문보기

IPC분류정보
국가/구분 United States(US) Patent 등록
국제특허분류(IPC7판)
  • G06K-009/00
출원번호 US-0122167 (1998-07-24)
발명자 / 주소
  • Balaban David J.
  • Aggarwal Arun
출원인 / 주소
  • Affymetrix, Inc.
대리인 / 주소
    Townsend and Townsend and Crew LLP
인용정보 피인용 횟수 : 48  인용 특허 : 22

초록 ▼

System and method for organizing information relating to polymer probe array chips including oligonucleotide array chips. A database model is provided which organizes information relating to sample preparation, chip layout, application of samples to chips, scanning of chips, expression analysis of c

대표청구항 ▼

[ What is claimed is:] [1.]1. A computer-implemented method for managing information relating to processing of polymer probe arrays, said method comprising:creating an electronically-stored experiment table, said experiment table storing a record for an experiment, said experiment record comprising

이 특허에 인용된 특허 (22)

  1. Southern Edwin (Oxford GB2), Apparatus and method for analyzing polynucleotide sequences and method of generating oligonucleotide arrays.
    상세보기
  2. Fodor Stephen P. A. (Palo Alto CA) Pirrung Michael C. (Durham NC) Read J. Leighton (Palo Alto CA) Stryer Lubert (Stanford CA), Array of oligonucleotides on a solid substrate.
    상세보기
  3. Ip Nancy Y. (Stamford CT) Baum Howard J. (Stony Point NY), Compositions and methods useful for genetic analysis.
    상세보기
  4. Hubbell Earl A. (Mt. View CA) Lipshutz Robert J. (Palo Alto CA) Morris Macdonald S. (San Jose CA) Winkler James L. (Palo Alto CA), Computer-aided engineering system for design of sequence arrays and lithographic masks.
    상세보기
  5. Hubbell Earl A. (Mt. View CA) Morris MacDonald S. (San Jose CA) Winkler James L. (Palo Alto CA), Computer-aided engineering system for design of sequence arrays and lithographic masks.
    상세보기
  6. Hubbell Earl A. ; Morris MacDonald S. ; Winkler James L., Computer-aided engineering system for design of sequence arrays and lithographic masks.
    상세보기
  7. Chee Mark S., Computer-aided visualization and analysis system for sequence evaluation.
    상세보기
  8. Shuber Anthony P., Direct sequence identification of mutations by cleavage- and ligation-associated mutation-specific sequencing.
    상세보기
  9. Lockhart David J. ; Brown Eugene L. ; Wong Gordon G. ; Chee Mark S. ; Gingeras Thomas R., Expression monitoring by hybridization to high density oligonucleotide arrays.
    상세보기
  10. Pirrung Michael C. (Durham NC) Read J. Leighton (Palo Alto CA) Fodor Stephen P. A. (Palo Alto CA) Stryer Lubert (Stanford CA), Large scale photolithographic solid phase synthesis of polypeptides and receptor binding screening thereof.
    상세보기
  11. Nova Michael P. ; Parandoosh Zahra ; Senyei Andrew E. ; Xiao Xiao-Yi ; David Gary S. ; Satoda Yozo ; Zhao Chanfeng ; Potash Hanan, Matrices with memories and uses thereof.
    상세보기
  12. Rothberg Jonathan Marc ; Deem Michael W. ; Simpson John W., Method and apparatus for identifying, classifying, or quantifying DNA sequences in a sample without sequencing.
    상세보기
  13. Fodor Stephen P.A. ; Solas Dennis W. ; Dower William J., Method of detecting nucleic acids.
    상세보기
  14. Drmanac Radoje T. (Beograd YUX) Crkvenjakov Radomir B. (Beograd YUX), Method of determining an ordered sequence of subfragments of a nucleic acid fragment by hybridization of oligonucleotide.
    상세보기
  15. Fodor Stephen P. A. ; Solas Dennis W. ; Dower William J., Method of identifying nucleotide differences.
    상세보기
  16. Drmanac Radoje T. (Belgrade YUX) Crkvenjakov Radomir B. (Belgrade YUX), Method of sequencing by hybridization of oligonucleotide probes.
    상세보기
  17. Drmanac Radoje T. (Beograd YUX) Crkvenjakov Radomir B. (Beograd YUX), Method of sequencing by hybridization of oligonucleotide probes.
    상세보기
  18. Drmanac Radoje T. (Beograd YUX) Crkvenjakov Radomir B. (Beograd YUX), Method of sequencing of genoms by hybridization of oligonucleotide probes.
    상세보기
  19. Fodor Stephen P. A. ; Solas Dennis W. ; Dower William J., Methods for nucleic acid analysis.
    상세보기
  20. Beattie Kenneth L., Microfabricated, flowthrough porous apparatus for discrete detection of binding reactions.
    상세보기
  21. Mullis Kary B. (Kensington CA), Process for amplifying nucleic acid sequences.
    상세보기
  22. Rine Jasper ; Ashby Matthew, Systems for generating and analyzing stimulus-response output signal matrices.
    상세보기

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  1. Dickinson, Todd A.; Meade, Shawn; Barnard, Steven M.; Czarnik, Anthony W.; Bierle, James; Kermani, Bahram G.; Chee, Mark S., Array compositions for improved signal detection.
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  2. Gardner, Steve, Bioinformatics system architecture with data and process integration.
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  3. Willey, James C.; Blomquist, Thomas M.; Crawford, Erin L.; Mullins, D'Anna N., Cancer risk biomarker.
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  4. Gulati, Sandeep, Detecting events of interest using quantum resonance interferometry.
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  5. Van Den Boom, Dirk Johannes; Oeth, Paul Andrew; Mahboubi, Payam, Detection and quantification of biomolecules using mass spectrometry.
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  6. Fu, Glenn K.; Jones, Keith W., Enzymatic methods for genotyping on arrays.
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  7. Mouritzen, Peter; Lomholt, Christian; Echwald, Søren Morgenthaler; Noerholm, Mikkel, Locked nucleic acid reagents for labelling nucleic acids.
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  8. Shirazi, Mohsen, Manufacturing and processing polymer arrays.
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  9. Balaban, David J.; Aggarwal, Arun, Method and apparatus for providing a bioinformatics database.
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  10. Balaban,David J.; Aggarwal,Arun, Method and apparatus for providing a bioinformatics database.
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  11. Balaban, David J.; Khurgin, Elina, Method and apparatus for providing an expression data mining database.
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  12. Bassett, Jr., Douglas; Buskirk, Stewart; Bondarenko, Andrey, Method and system for analyzing biological response signal data.
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  13. Gulati, Sandeep, Method and system for signal detection in arrayed instrumentation based on quantum resonance interferometry.
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  14. Gulati, Sandeep, Method and system using active signal processing for repeatable signal amplification in dynamic noise backgrounds.
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  15. Hong, Kyeong Man, Method for measuring chromosome, gene or specific nucleotide sequence copy numbers using SNP array.
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  16. Demuth, Jeffrey P.; Crawford, Erin L.; Willey, James C.; Weaver, David A.; Warner, Kristy A.; Graves, Timothy G., Method for selecting a treatment for non-small cell lung cancer using gene expression profiles.
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  17. Kim, Sung K.; Deciu, Cosmin, Methods and compositions for analyzing nucleic acid.
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  18. Hoyal-Wrightson, Carolyn R.; Braun, Andreas; Schmidt, Karsten E, Methods and compositions for the extraction and amplification of nucleic acid from a sample.
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  19. Hoyal-Wrightson, Carolyn R.; Braun, Andreas; Schmidt, Karsten E., Methods and compositions for the extraction and amplification of nucleic acid from a sample.
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  20. Lee, Min Seob; Yang, Yanfeng, Methods and compositions for universal size-specific PCR.
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  21. Cantor, Charles R.; DeSantis, Grace; Mueller, Reinhold; Ehrich, Mathias, Methods and processes for non-invasive assessment of genetic variations.
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  22. Mendrick,Donna; Porter,Mark; Johnson,Kory; Higgs,Brandon; Castle,Arthur; Elashoff,Michael, Methods for determining renal toxins.
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  23. Dickinson, Todd; Coblentz, Kenneth D.; Carlson, Edward, Methods of detecting targets on an array.
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  24. Mendrick,Donna L.; Porter,Mark W.; Johnson,Kory R.; Higgs,Brandon; Castle,Arthur; Elashoff,Michael, Molecular cardiotoxicology modeling.
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  25. Mendrick,Donna; Porter,Mark; Johnson,Kory; Higgs,Brandon; Castle,Arthur; Elashoff,Michael, Molecular toxicology modeling.
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  26. Oliphant, Arnold; Stuelpnagel, John R.; Chee, Mark S.; Butler, Scott L.; Fan, Jian Bing; Shen, Min Jui Richard, Multiplex nucleic acid reactions.
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  27. Oliphant, Arnold; Stuelpnagel, John R.; Chee, Mark S.; Butler, Scott L.; Fan, Jian-Bing; Shen, Min-Jui Richard, Multiplex nucleic acid reactions.
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  28. Oliphant, Arnold; Stuelpnagel, John R.; Chee, Mark S.; Butler, Scott L.; Fan, Jian-Bing; Shen, Min-Jui Richard, Multiplex nucleic acid reactions.
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  29. Oliphant, Arnold; Stuelpnagel, John R.; Chee, Mark S.; Butler, Scott L.; Fan, Jian-Bing; Shen, Min-Jui Richard, Multiplex nucleic acid reactions.
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  30. Shen, Min-Jui Richard; Oliphant, Arnold; Butler, Scott L.; Stuelpnagel, John R.; Chee, Mark S.; Kuhn, Kenneth M.; Fan, Jian-Bing, Multiplex nucleic acid reactions.
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  31. Fan, Jian-Bing, Multiplexed methylation detection methods.
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  32. Oeth, Paul A.; Ehrich, Mathias; Lee, Min S., Nucleic acid-based tests for RHD typing, gender determination and nucleic acid quantification.
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  33. Oeth, Paul Andrew; Ehrich, Mathias, Nucleic acid-based tests for RhD typing, gender determination and nucleic acid quantification.
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  34. Oeth, Paul Andrew; Mahboubi, Payam; Lee, Min Seob, Nucleic acid-based tests for prenatal gender determination.
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  35. Gardner,Steve, Ontology-based information management system and method.
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  36. Ehrich, Mathias; Nygren, Anders Olof Herman, Processes and compositions for methylation-based acid enrichment of fetal nucleic acid from a maternal sample useful for non-invasive prenatal diagnoses.
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  37. Ehrich, Mathias; Nygren, Anders Olof Herman; Jensen, Taylor Jacob, Processes and compositions for methylation-based enrichment of fetal nucleic acid from a maternal sample useful for non invasive prenatal diagnoses.
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  38. Ehrich, Mathias; Mistro, Guy Del; Deciu, Cosmin; Chen, Yong Qing; McCullough, Ron Michael; Tim, Roger Chan, Processes and kits for identifying aneuploidy.
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  39. Nygren, Anders, Quantification of a minority nucleic acid species.
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  40. Nygren, Anders, Quantification of a minority nucleic acid species.
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  41. Nygren, Anders, Quantification of a minority nucleic acid species.
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  42. Ehrich, Mathias; Van Den Boom, Dirk Johannes, Restriction endonuclease enhanced polymorphic sequence detection.
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  43. Ehrich, Mathias; Van den Boom, Dirk Johannes, Restriction endonuclease enhanced polymorphic sequence detection.
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  44. Ehrich, Mathias; Van den Boom, Dirk Johannes, Restriction endonuclease enhanced polymorphic sequence detection.
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  45. Chu, Tzu-Ming; Wolfinger, Russell D., Statistical outlier detection for gene expression microarray data.
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  46. Gulati,Sandeep, System and method for characterizing microarray output data.
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  47. Gulati,Sandeep, Technique for extracting arrayed data.
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  48. Gulati, Sandeep, Technique for quantiating biological markers using quantum resonance interferometry.
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