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Diversity and Genotypic Structure of ECOR Collection Determined by Repetitive Extragenic Palindromic PCR Genome Fingerprinting 원문보기

Journal of microbiology and biotechnology, v.15 no.3, 2005년, pp.672 - 677  

HWANG KEUM-OK (Department of Environmental Sciences, Hankuk University of Foreign Studies) ,  JANG HYO-MI (Department of Environmental Sciences, Hankuk University of Foreign Studies) ,  CHO JAE-CHANG (Department of Environmental Sciences, Hankuk University of Foreign Studies)

Abstract ▼ AI-Helper 아이콘AI-Helper

The standard reference collection of strains for E. coli, the ECOR collection, was analyzed by a genome-based typing method. Seventy-one ECOR strains were subjected to repetitive extragenic palindromic PCR genome fingerprinting with BOX primers (BOX-PCR). Using a similarity value of 0.8 or more afte...

주제어

#Genotype   #diversity   #ECOR   #BOX-PCR  

참고문헌 (38)

  1. Amhaz, J. M., A. Andrade, S. Y. Bando, T. L. Tanaka, C. A. Moreira-Filho, and M. B. Martinez. 2004. Molecular typing and phylogenetic analysis of enteroinvasive Escherichia coli using the fliC gene sequence. FEMS Microbiol. Lett. 235: 259-264 

    상세보기 crossref

  2. Anton, A. I., A. J. Martinez-Murcia, and F. RodriguezValera. 1999. Intraspecific diversity of the 23S rRNA gene and the. spacer region downstream in Escherichia coli. J. Bacteriol. 181: 2703-2709 

    상세보기

  3. Bae, J. W., J. J. Kim, C. O. Jeon, K. Kim, J. J. Song, S. G. Lee, H. Poo, C. M. Jung, Y. H. Park, and M. H. Sung. 2003. Application of denaturing gradient gel electrophoresis to estimate the diversity of commensal thermophiles. J. Microbiol. Biotechnol. 13: 1008-1012 

    원문보기 상세보기

  4. Beyene, D., S. Kassa, F. Ampy, A. Asseffa, T. Gebremedhin, and P. van Berkum. 2004. Ethiopian soils harbor natural populations of rhizobia that form symbioses with common bean (Phaseolus vulgaris L.). Arch. Microbiol. 181: 129-136 

    상세보기 crossref

  5. Chao, A. and S.-M. Lee. 1992. Estimating the number of classes via sample coverage. J. Am. Stat. Assoc. 87: 210-217 

    상세보기 crossref

  6. Cho, J. C. and J. M. Tiedje. 2001. Bacterial species determination from DNA-DNA hybridization by using genome fragments and DNA microarrays. Appl. Environ. Microbiol. 67: 3677-3682 

    상세보기 crossref

  7. Cho, J. C. and J. M. Tiedje. 2000. Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil. Appl. Environ. Microbiol. 66: 5448-5456 

    상세보기 crossref

  8. Clermont, O., S. Bonacorsi, and E. Bingen. 2000. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl. Environ. Microbiol. 66: 4555-4558 

    상세보기 crossref

  9. De Baets, L., I. Van der Taelen, M. De Filette, D. Pierard, L. Allison, H. De Greve, J. P. Hernalsteens, and H. Imberechts. 2004. Genetic typing of shiga toxin 2 variants of Escherichia coli by PCR-restriction fragment length polymorphism analysis. Appl. Environ. Microbiol. 70: 6309-6314 

    상세보기 crossref

  10. Diamant, E., Y. Palti, R. Gur-Arie, H. Cohen, E. M. Hallerman, and Y. Kashi. 2004. Phylogeny and strain typing of Escherichia coli, inferred from variation at mononucleotide repeat loci. Appl. Environ. Microbiol. 70: 2464-2473 

    상세보기 crossref

  11. Gilson, E., J. M. Clement, D. Brutlag, and M. Hofnung. 1984. A family of dispersed repetitive extragenic palindromic DNA sequences in E. coli. EMBO J. 3: 1417-1421 

    상세보기

  12. Higgins, C. F., G. F. Ames, W. M. Barnes, J. M. Clement, and M. Hofnung. 1982. A novel intercistronic regulatory element of prokaryotic operons. Nature 298: 760-762 

    상세보기 crossref

  13. Hohwy, J., J. Reinholdt, and M. Kilian. 2001. Population dynamics of Streptococcus mitis in its natural habitat. Infect. Immun. 69: 6055-6063 

    상세보기 crossref

  14. Hulton, C. S., C. F. Higgins, and P. M. Sharp. 1991. ERIC sequences: A novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol. Microbiol. 5: 825-834 

    상세보기 crossref

  15. Kim, S. H., K. B. Lee, J. S. Lee, and Y. H. Cho. 2003. Genomic diversification by phage-derived genomic islands in Pseudomonas aeruginosa. J. Microbiol. Biotechnol. 13: 783-832 

    원문보기 상세보기

  16. Kim, S. O., O. Y. Lim, S. H. Kim, J. Y. Kim, Y. H. Kang, and B. K. Lee. 2003. Pulsed-field gel electrophoresis and mutation typing of gyrA gene of quinolone-resistant Salmonella enterica serovar paratyphi A isolated from outbreak and sporadic cases, 1998-2002, Korea. J. Microbiol. Biotechnol. 13: 155-158 

    상세보기

  17. Kim, T. W., S. H. Jung, J. Y. Lee, S. K. Choi, S. H. Park, J. S. Jo, and H. Y. Kim. 2003. Identification of lactic acid bacteria in kimchi using SDS-PAGE profiles of whole cell proteins. J. Microbiol. Biotechnol. 13: 119-124 

    원문보기 상세보기

  18. Koeuth, T., J. Versalovic, and J. R. Lupski. 1995. Differential subsequence conservation of interspersed repetitive Streptococcus pneumoniae BOX elements in diverse bacteria. Genome Res. 5: 408-418 

    상세보기 crossref

  19. Krawiec, S. and M. Riley. 1990. Organization of the bacterial chromosome. Microbiol. Rev. 54: 502-539 

    상세보기

  20. Lecointre, G, L. Rachdi, P. Darlu, and E. Denamur. 1998. Escherichia coli molecular phylogeny using the incongruence length difference test. Mol. Biol. Evol. 15: 1685-1695 

    상세보기 crossref

  21. Legendre, P. and L. Legendre. 1998. Numerical Ecology. Elsevier Science, Amsterdam, The Netherlands 

  22. Lupski, J. R. and G. M. Weinstock. 1992. Short, interspersed repetitive DNA sequences in prokaryotic genomes. J. Bacteriol. 174: 4525-4529 

    상세보기 crossref

  23. Martin, B., O. Humbert, M. Camara, E. Guenzi, J. Walker, T. Mitchell, P. Andrew, M. Prudhomme, G. Alloing, and R. Hakenbeck. 1992. A highly conserved repeated DNA element located in the chromosome of Streptococcus pneumoniae. Nucleic Acids Res. 20: 3479-3483 

    상세보기 crossref

  24. Milkman, R. 1973. Electrophoretic variation in Escherichia coli from natural sources. Science 182: 1024-1026 

    상세보기 crossref

  25. Minana-Galbis, D., M. Farfan, M. C. Fuste, and J. G. Loren. 2004. Genetic diversity and population structure of Aeromonas hydrophila, Aer. bestiarum, Aer. salmonicida and Aer. popoffii by multilocus enzyme electrophoresis (MLEE). Environ. Microbiol. 6: 198-208 

    상세보기 crossref

  26. Mora, A., M. Blanco, J. E. Blanco, M. P. Alonso, G. Dhabi, F. Thomson-Carter, M. A. Usera, R. Bartolome, G. Prats, and J. Blanco. 2004. Phage types and genotypes of shiga toxinproducing Escherichia coli 0157:H7 isolates from humans and animals in Spain: Identification and characterization of two predominating phage types (PT2 and PT8). J. Clin. Microbiol. 42: 4007-4015 

    상세보기 crossref

  27. Ochman, H. and R. K. Selander. 1984. Standard reference strains of Escherichia coli from natural populations. J. Bacteriol. 157: 690-693 

    상세보기

  28. Rademaker, J. L., B. Hoste, F. J. Louws, K. Kersters, J. Swings, L. Vauterin, P. Vauterin, and F. J. de Bruijn. 2000. Comparison of AFLP and rep-PCR genomic fingerprinting with DNA-DNA homology studies: Xanthomonas as a modeL system. Int. J. Syst. Evol. Microbiol. 50: 665-677 

    상세보기 crossref

  29. Rademaker, J. L. W., F. J. Louws, and F. J. de Bruijn. 1998. Characterization of the diversity of ecologically important microbes by rep-PCR fingerprinting, pp. 1-26. In A. D. L. Akkermans, J. D. van Elsas, and F. J. de Bruijn (eds.), Molecular Microbial Ecology Manual, suppl. 3. Kluwer Academic Publishers, Dordrecht, The Netherlands 

  30. Regua-Mangia, A. H., B. C. Guth, J. R. da Costa Andrade, K. Irino, A. B. Pacheco, L. C. Ferreira, V. Zahner, and L. M. Teixeira. 2004. Genotypic and phenotypic characterization of enterotoxigenic Escherichia coli (ETEC) strains isolated in Rio de Janeiro city, Brazil. FEMS Immunol. Med Microbiol. 40: 155-162 

    상세보기 crossref

  31. Selander, R. K., D. A. Caugant, H. Ochman, J. M. Musser, M. N. Gilmour, and T. S. Whittam. 1986. Methods of multi locus enzyme electrophoresis for bacterial population genetics and systematics. Appl. Environ. Microbiol. 51: 873-884 

    상세보기

  32. Selander, R. K., T. K. Korhonen, V. Vaisanen-Rhen, P. H. Williams, P. E. Pattison, and D. A. Caugant. 1986. Genetic relationships and clonal structure of strains of Escherichia coli causing neonatal septicemia and meningitis. Infect. Immun. 52: 213-222 

    상세보기

  33. Sharples, G. J. and R. G. Lloyd. 1990. A novel repeated DNA sequence located in the intergenic regions of bacterial chromosomes. Nucleic Acids Res. 18: 6503-6508 

    상세보기 crossref

  34. Stackebrandt, E., W. Frederiksen, G. M. Garrity, P. A. Grimont, P. Kampfer, M. C. Maiden, X. Nesme, R. Rossello-Mora, J. Swings, H. G. Truper, L. Vauterin, A. C. Ward, and W. B. Whitman. 2002. Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 52: 1043-1047 

    상세보기 crossref

  35. Valsecchi, E. 1998. Tissue boiling: A short-cut in DNA extraction for large-scale population screenings. Mol. Ecol. 7: 1243-1245 

    상세보기 crossref

  36. Vernozy-Rozand, C., M. P. Montet, Y. Bertin, F. Trably, J. P. Girardeau, C. Martin, V. Livrelli, and L. Beutin. 2004. Serotyping, stx2 subtyping, and characterization ofthe locus of enterocyte effacement island of shiga toxin-producing Escherichia coli and E. coli O157:H7 strains isolated from the environment in France. Appl. Environ. Microbiol. 70: 2556-2559 

    상세보기 crossref

  37. Welinder-Olsson, C., M. Badenfors, T. Cheasty, E. Kjellin, and B. Kaijser. 2002. Genetic profiling of enterohemorrhagic Escherichia coli strains in relation to clonality and clinical signs of infection. J. Clin. Microbiol. 40: 959-964 

    상세보기 crossref

  38. Whittam, T. S., M. L. Wolfe, I. K. Wachsmuth, F. Orskov, I. Orskov, and R. A. Wilson. 1993. Clonal relationships among Escherichia coli strains that cause hemorrhagic colitis and infantile diarrhea. Infect. Immun. 61: 1619-1629 

    상세보기

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