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[해외논문] Sound Vibration-Triggered Epigenetic Modulation Induces Plant Root Immunity Against Ralstonia solanacearum 원문보기

Frontiers in microbiology, v.11, 2020년, pp.1978 -   

Jung, Jihye ,  Kim, Seon-Kyu ,  Jung, Sung-Hee ,  Jeong, Mi-Jeong ,  Ryu, Choong-Min

Abstract AI-Helper 아이콘AI-Helper

Sound vibration (SV) is one of the several environmental stimuli that induce physiological changes in plants including changes in plant immunity. Immune activation is a complicated process involving epigenetic modifications, however, SV-induced epigenetic modifications remain unexplored. Here, we p...

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참고문헌 (64)

  1. Akmal M. Baig M. S. Khan J. A. ( 2017 ). Suppression of cotton leaf curl disease symptoms in Gossypium hirsutum through over expression of host-encoded miRNAs. J. Biotechnol. 263 21 ? 29 . 10.1016/j.jbiotec.2017.10.003 29017848 

  2. Anders S. Pyl P. T. Huber W. ( 2015 ). HTSeq?a Python framework to work with high-throughput sequencing data. Bioinformatics 31 166 ? 169 . 10.1093/bioinformatics/btu638 25260700 

  3. Appel H. M. Cocroft R. B. ( 2014 ). Plants respond to leaf vibrations caused by insect herbivore chewing. Oecologia 175 1257 ? 1266 . 10.1007/s00442-014-2995-6 24985883 

  4. Bartrina I. Otto E. Strnad M. Werner T. Schmulling T. ( 2011 ). Cytokinin regulates the activity of reproductive meristems, flower organ size, ovule formation, and thus seed yield in Arabidopsis thaliana . Plant Cell 23 69 ? 80 . 10.1105/tpc.110.079079 21224426 

  5. Basu D. Haswell E. S. ( 2017 ). Plant mechanosensitive ion channels: an ocean of possibilities. Curr. Opin. Plant Biol. 40 43 ? 48 . 10.1016/j.pbi.2017.07.002 28750206 

  6. Boccara M. Sarazin A. Thiebeauld O. Jay F. Voinnet O. Navarro L. ( 2014 ). The Arabidopsis miR472-RDR6 silencing pathway modulates PAMP- and effector-triggered immunity through the post-transcriptional control of disease resistance genes. PLoS Pathog. 10 : e1003883 . 10.1371/journal.ppat.1003883 24453975 

  7. Boivin S. Fonouni-Farde C. Frugier F. ( 2016 ). How auxin and cytokinin phytohormones modulate root microbe interactions. Front. Plant Sci. 7 : 1240 . 10.3389/fpls.2016.01240 27588025 

  8. Bonello P. Storer A. J. Gordon T. R. Wood D. L. Heller W. ( 2003 ). Systemic effects of Heterobasidion annosum on ferulic acid glucoside and lignin of presymptomatic ponderosa pine phloem, and potential effects on bark-beetle-associated fungi. J. Chem. Ecol. 29 1167 ? 1182 . 12857029 

  9. Brosnan C. A. Mitter N. Christie M. Smith N. A. Waterhouse P. M. Carroll B. J. ( 2007 ). Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis . Proc. Natl. Acad. Sci. U.S.A. 104 14741 ? 14746 . 10.1073/pnas.0706701104 17785412 

  10. Catalanotto C. Cogoni C. Zardo G. ( 2016 ). MicroRNA in control of gene expression: an overview of nuclear functions. Int. J. Mol. Sci. 17 : 1712 . 10.3390/ijms17101712 27754357 

  11. Chezem W. R. Memon A. Li F.-S. Weng J.-K. Clay N. K. ( 2017 ). SG2-type R2R3-MYB transcription factor MYB15 controls defense-induced lignification and basal immunity in Arabidopsis . Plant Cell 29 1907 ? 1926 . 10.1105/tpc.16.00954 28733420 

  12. Choi B. Ghosh R. Gururani M. A. Shanmugam G. Jeon J. Kim J. ( 2017 ). Positive regulatory role of sound vibration treatment in Arabidopsis thaliana against Botrytis cinerea infection. Sci. Rep. 7 : 2527 . 10.1038/s41598-017-02556-9 28559545 

  13. Denance N. Ranocha P. Oria N. Barlet X. Riviere M. P. Yadeta K. A. ( 2013 ). Arabidopsis wat1 (walls are thin1)-mediated resistance to the bacterial vascular pathogen, Ralstonia solanacearum , is accompanied by cross-regulation of salicylic acid and tryptophan metabolism. Plant J. 73 225 ? 239 . 10.1111/tpj.12027 22978675 

  14. Dobin A. Davis C. A. Schlesinger F. Drenkow J. Zaleski C. Jha S. ( 2013 ). STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29 15 ? 21 . 10.1093/bioinformatics/bts635 23104886 

  15. Espinas N. A. Saze H. Saijo Y. ( 2016 ). Epigenetic control of defense signaling and priming in plants. Front. Plant Sci. 7 : 1201 . 10.3389/fpls.2016.01201 27563304 

  16. Ferreira V. Pianzzola M. J. Vilaro F. L. Galvan G. A. Tondo M. L. Rodriguez M. V. ( 2017 ). Interspecific potato breeding lines display differential colonization patterns and induced defense responses after Ralstonia solanacearum Infection. Front. Plant Sci. 8 : 1424 . 10.3389/fpls.2017.01424 28894453 

  17. Gamas P. Brault M. Jardinaud M. F. Frugier F. ( 2017 ). Cytokinins in symbiotic nodulation: when, where, what for? Trends Plant Sci. 22 792 ? 802 . 10.1016/j.tplants.2017.06.012 28739135 

  18. Gan E.-S. Huang J. Ito T. ( 2013 ). “ Chapter three ? functional roles of histone modification, chromatin remodeling and micrornas in arabidopsis flower development ,” in International Review of Cell and Molecular Biology , ed. Jeon K. W. ( Cambridge, MA : Academic Press ), 115 ? 161 . 10.1016/b978-0-12-407695-2.00003-2 

  19. Ghosh R. Mishra R. C. Choi B. Kwon Y. S. Bae D. W. Park S.-C. ( 2016 ). Exposure to sound vibrations lead to transcriptomic, proteomic and hormonal changes in Arabidopsis . Sci. Rep. 6 : 33370 . 10.1038/srep33370 27665921 

  20. Hanemian M. Barlet X. Sorin C. Yadeta K. A. Keller H. Favery B. ( 2016 ). Arabidopsis CLAVATA1 and CLAVATA2 receptors contribute to Ralstonia solanacearum pathogenicity through a miR169-dependent pathway. New Phytol. 211 502 ? 515 . 10.1111/nph.13913 26990325 

  21. Hassanien R. H. E. Hou T.-Z. Li Y.-F. Li B.-M. ( 2014 ). Advances in effects of sound waves on plants. J. Integr. Agric. 13 335 ? 348 . 10.1016/S2095-3119(13)60492-X 

  22. Hwang H. H. Wang M. H. Lee Y. L. Tsai Y. L. Li Y. H. Yang F. J. ( 2010 ). Agrobacterium -produced and exogenous cytokinin-modulated Agrobacterium -mediated plant transformation. Mol. Plant Pathol. 11 677 ? 690 . 10.1111/j.1364-3703.2010.00637.x 20696005 

  23. Ishihara T. Mitsuhara I. Takahashi H. Nakaho K. ( 2012 ). Transcriptome analysis of quantitative resistance-specific response upon Ralstonia solanacearum infection in tomato. PLoS One 7 : e46763 . 10.1371/journal.pone.0046763 23071630 

  24. Jones J. D. Dangl J. L. ( 2006 ). The plant immune system. Nature 444 323 ? 329 . 10.1038/nature05286 17108957 

  25. Jung J. Kim S. K. Kim J. Y. Jeong M. J. Ryu C. M. ( 2018 ). Beyond chemical triggers: evidence for sound-evoked physiological reactions in plants. Front. Plant Sci. 9 : 25 . 10.3389/fpls.2018.00025 29441077 

  26. Kaikkonen M. U. Lam M. T. Y. Glass C. K. ( 2011 ). Non-coding RNAs as regulators of gene expression and epigenetics. Cardiovasc. Res. 90 430 ? 440 . 10.1093/cvr/cvr097 21558279 

  27. Kieber J. J. Schaller G. E. ( 2014 ). Cytokinins. Arabidopsis Book 12 : e0168 . 10.1199/tab.0168 24465173 

  28. Kim D. Pertea G. Trapnell C. Pimentel H. Kelley R. Salzberg S. L. ( 2013 ). TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 14 : R36 . 10.1186/gb-2013-14-4-r36 23618408 

  29. Kouzarides T. ( 2007 ). Chromatin modifications and their function. Cell 128 693 ? 705 . 10.1016/j.cell.2007.02.005 17320507 

  30. Kumar S. ( 2018 ). Epigenomics of plant responses to environmental stress. Epigenomes 2 : 6 10.3390/epigenomes2010006 

  31. Leyva-Gonzalez M. A. Ibarra-Laclette E. Cruz-Ramirez A. Herrera-Estrella L. ( 2012 ). Functional and transcriptome analysis reveals an acclimatization strategy for abiotic stress tolerance mediated by Arabidopsis NF-YA family members. PLoS One 7 : e48138 . 10.1371/journal.pone.0048138 23118940 

  32. Li Y. Zhao S.-L. Li J.-L. Hu X.-H. Wang H. Cao X.-L. ( 2017 ). Osa-miR169 negatively regulates rice immunity against the blast fungus Magnaporthe oryzae . Front. Plant Sci. 8 : 2 . 10.3389/fpls.2017.00002 28144248 

  33. Liu Q. Luo L. Zheng L. ( 2018 ). Lignins: biosynthesis and biological functions in plants. Int. J. Mol. Sci. 19 : 335 . 10.3390/ijms19020335 29364145 

  34. Liu S. R. Zhou J. J. Hu C. G. Wei C. L. Zhang J. Z. ( 2017 ). MicroRNA-mediated gene silencing in plant defense and viral counter-defense. Front. Microbiol. 8 : 1801 . 10.3389/fmicb.2017.01801 28979248 

  35. Liu T. Zhang X. Yang H. Agerbirk N. Qiu Y. Wang H. ( 2016 ). Aromatic glucosinolate biosynthesis pathway in Barbarea vulgaris and its response to Plutella xylostella infestation. Front. Plant Sci. 7 : 83 . 10.3389/fpls.2016.00083 26904055 

  36. Lopes C. A. Rossato M. ( 2018 ). History and status of selected hosts of the Ralstonia solanacearum species complex causing bacterial wilt in Brazil. Front. Microbiol. 9 : 1228 . 10.3389/fmicb.2018.01228 29951047 

  37. Lowe-Power T. M. Jacobs J. M. Ailloud F. Fochs B. Prior P. Allen C. ( 2016 ). Degradation of the plant defense signal salicylic acid protects Ralstonia solanacearum from toxicity and enhances virulence on tobacco. mBio 7 : e00656-16 . 10.1128/mBio.00656-16 27329752 

  38. Lu C. Meyers B. C. Green P. J. ( 2007 ). Construction of small RNA cDNA libraries for deep sequencing. Methods 43 110 ? 117 . 10.1016/j.ymeth.2007.05.002 17889797 

  39. Mengel A. Ageeva A. Georgii E. Bernhardt J. Wu K. Durner J. ( 2017 ). Nitric oxide modulates histone acetylation at stress genes by inhibition of histone deacetylases. Plant Physiol. 173 1434 ? 1452 . 10.1104/pp.16.01734 27980017 

  40. Moreau S. Fromentin J. Vailleau F. Vernie T. Huguet S. Balzergue S. ( 2014 ). The symbiotic transcription factor MtEFD and cytokinins are positively acting in the Medicago truncatula and Ralstonia solanacearum pathogenic interaction. New Phytol. 201 1343 ? 1357 . 10.1111/nph.12636 24325235 

  41. Nguyen C. T. Kurenda A. Stolz S. Chetelat A. Farmer E. E. ( 2018 ). Identification of cell populations necessary for leaf-to-leaf electrical signaling in a wounded plant. Proc. Natl. Acad. Sci. U.S.A. 115 10178 ? 10183 . 10.1073/pnas.1807049115 30228123 

  42. Park P. J. ( 2009 ). ChIP?seq: advantages and challenges of a maturing technology. Nat. Rev. Genet. 10 : 669 . 10.1038/nrg2641 19736561 

  43. Polydore S. Axtell M. J. ( 2018 ). Analysis of RDR1/RDR2/RDR6-independent small RNAs in Arabidopsis thaliana improves MIRNA annotations and reveals unexplained types of short interfering RNA loci. Plant J. 94 1051 ? 1063 . 10.1111/tpj.13919 29654642 

  44. Ponce de Leon I. Oliver J. P. Castro A. Gaggero C. Bentancor M. Vidal S. ( 2007 ). Erwinia carotovora elicitors and Botrytis cinerea activate defense responses in Physcomitrella patens . BMC Plant Biol. 7 : 52 . 10.1186/1471-2229-7-52 17922917 

  45. Qi D. Innes R. W. ( 2013 ). Recent advances in plant NLR structure, function, localization, and signaling. Front. Immunol. 4 : 348 . 10.3389/fimmu.2013.00348 24155748 

  46. Ramirez-Prado J. S. Abulfaraj A. A. Rayapuram N. Benhamed M. Hirt H. ( 2018a ). Plant immunity: from signaling to epigenetic control of defense. Trends Plant Sci. 23 833 ? 844 . 10.1016/j.tplants.2018.06.004 29970339 

  47. Ramirez-Prado J. S. Piquerez S. J. M. Bendahmane A. Hirt H. Raynaud C. Benhamed M. ( 2018b ). Modify the histone to win the battle: chromatin dynamics in plant-pathogen interactions. Front. Plant Sci. 9 : 355 . 10.3389/fpls.2018.00355 29616066 

  48. Robinson M. D. McCarthy D. J. Smyth G. K. ( 2010 ). edgeR: a bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26 139 ? 140 . 10.1093/bioinformatics/btp616 19910308 

  49. Sailer C. Babst-Kostecka A. Fischer M. C. Zoller S. Widmer A. Vollenweider P. ( 2018 ). Transmembrane transport and stress response genes play an important role in adaptation of Arabidopsis halleri to metalliferous soils. Sci. Rep. 8 : 16085 . 10.1038/s41598-018-33938-2 30382172 

  50. Schenk S. T. Schikora A. ( 2015 ). Lignin extraction and quantification, a tool to monitor defense reaction at the plant cell wall level. Bio Protoc. 5 : e1430 10.21769/BioProtoc.1430 

  51. Siemens J. Keller I. Sarx J. Kunz S. Schuller A. Nagel W. ( 2006 ). Transcriptome analysis of Arabidopsis clubroots indicate a key role for cytokinins in disease development. Mol. Plant Microbe. Interact. 19 480 ? 494 . 10.1094/mpmi-19-0480 16673935 

  52. Sorin C. Declerck M. Christ A. Blein T. Ma L. Lelandais-Briere C. ( 2014 ). A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis . New Phytol. 202 1197 ? 1211 . 10.1111/nph.12735 24533947 

  53. Sotelo T. Lema M. Soengas P. Cartea M. E. Velasco P. ( 2015 ). In vitro activity of glucosinolates and their degradation products against brassica-pathogenic bacteria and fungi. Appl. Environ. Microbiol. 81 432 ? 440 . 10.1128/aem.03142-14 25362058 

  54. Tata S. K. Jung J. Kim Y. H. Choi J. Y. Jung J. Y. Lee I. J. ( 2016 ). Heterologous expression of chloroplast-localized geranylgeranyl pyrophosphate synthase confers fast plant growth, early flowering and increased seed yield. Plant Biotechnol. J. 14 29 ? 39 . 10.1111/pbi.12333 25644367 

  55. Tianzhen H. Baoming L. Guanghui T. Qing Z. Yingping X. Lirong Q. ( 2009 ). Application of acoustic frequency technology to protected vegetable production. Trans. Chin. Soc. Agric. Eng. 25 156 ? 159 . 10.3969/j.issn.1002-6819.2009.2.030 

  56. Vaucheret H. ( 2006 ). Post-transcriptional small RNA pathways in plants: mechanisms and regulations. Genes. Dev. 20 759 ? 771 . 10.1101/gad.1410506 16600909 

  57. Vincent T. R. Avramova M. Canham J. Higgins P. Bilkey N. Mugford S. T. ( 2017 ). Interplay of plasma membrane and vacuolar ion channels, together with BAK1, elicits rapid cytosolic calcium elevations in Arabidopsis during aphid feeding. Plant Cell 29 1460 ? 1479 . 10.1105/tpc.17.00136 28559475 

  58. Wang W. Liu D. Zhang X. Chen D. Cheng Y. Shen F. ( 2018 ). Plant MicroRNAs in cross-kingdom regulation of gene expression. Int. J. Mol. Sci. 19 : 2007 . 10.3390/ijms19072007 29996470 

  59. Yamaguchi N. Winter C. M. Wu M. F. Kwon C. S. William D. A. Wagner D. ( 2014 ). PROTOCOLS: chromatin immunoprecipitation from Arabidopsis Tissues. Arabidopsis Book 12 : e0170 . 10.1199/tab.0170 24653666 

  60. Zhai J. Jeong D.-H. De Paoli E. Park S. Rosen B. D. Li Y. ( 2011 ). MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs. Genes Dev. 25 2540 ? 2553 . 10.1101/gad.177527.111 22156213 

  61. Zhang R. Zheng F. Wei S. Zhang S. Li G. Cao P. ( 2019 ). Evolution of disease defense genes and their regulators in plants. Int. J. Mol. 20 : 335 . 10.3390/ijms20020335 30650550 

  62. Zhang T. Zhao Y. L. Zhao J. H. Wang S. Jin Y. Chen Z. Q. ( 2016 ). Cotton plants export microRNAs to inhibit virulence gene expression in a fungal pathogen. Nat. Plants 2 : 16153 . 10.1038/nplants.2016.153 27668926 

  63. Zhang Y. Liu T. Meyer C. A. Eeckhoute J. Johnson D. S. Bernstein B. E. ( 2008 ). Model-based analysis of ChIP-Seq (MACS). Genome Biol. 9 : R137 . 10.1186/gb-2008-9-9-r137 18798982 

  64. Zhao Q. Nakashima J. Chen F. Yin Y. Fu C. Yun J. ( 2013 ). Laccase is necessary and nonredundant with peroxidase for lignin polymerization during vascular development in Arabidopsis . Plant Cell 25 3976 ? 3987 . 10.1105/tpc.113.117770 24143805 

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