참고문헌 (47)

1. Nat. Rev. Neurosci. BJ Molyneaux 8 427 2007 10.1038/nrn2151 Molyneaux, B. J., Arlotta, P., Menezes, J. R. L. & Macklis, J. D. Neuronal subtype specification in the cerebral cortex. Nat. Rev. Neurosci. 8, 427-437 (2007). 

   상세보기

2. Neuron MR Freeman 80 613 2013 10.1016/j.neuron.2013.10.034 Freeman, M. R. & Rowitch, D. H. Evolving concepts of gliogenesis: a look way back and ahead to the next 25 years. Neuron 80, 613-623 (2013). 

   상세보기

3. Cell JP Doyle 135 749 2008 10.1016/j.cell.2008.10.029 Doyle, J. P. et al. Application of a translational profiling approach for the comparative analysis of CNS cell types. Cell 135, 749-762 (2008). 

   상세보기

4. Chai, H. et al. Neural circuit-specialized astrocytes: transcriptomic, proteomic, morphological, and functional evidence. Neuron 548, 396-397 (2017). 

5. John Lin, C.-C. et al. Identification of diverse astrocyte populations and their malignant analogs. Nat. Neurosci. 20, 396-405 (2017). 

6. Cell Rep. MM Boisvert 22 269 2018 10.1016/j.celrep.2017.12.039 Boisvert, M. M., Erikson, G. A., Shokhirev, M. N. & Allen, N. J. The aging astrocyte transcriptome from multiple regions of the mouse brain. Cell Rep. 22, 269-285 (2018). 

   상세보기

7. Nat. Commun. D Lanjakornsiripan 9 2018 10.1038/s41467-018-03940-3 Lanjakornsiripan, D. et al. Layer-specific morphological and molecular differences in neocortical astrocytes and their dependence on neuronal layers. Nat. Commun. 9, 1623 (2018). 

   상세보기

8. Nature AV Molofsky 509 189 2014 10.1038/nature13161 Molofsky, A. V. et al. Astrocyte-encoded positional cues maintain sensorimotor circuit integrity. Nature 509, 189-194 (2014). 

   상세보기

9. Science E Lein 358 64 2017 10.1126/science.aan6827 Lein, E., Borm, L. E. & Linnarsson, S. The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing. Science 358, 64-69 (2017). 

   상세보기

10. Proc. Natl Acad. Sci. USA JR Moffitt 113 14456 2016 10.1073/pnas.1617699113 Moffitt, J. R. et al. High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing. Proc. Natl Acad. Sci. USA 113, 14456-14461 (2016). 

    상세보기

11. Neuron S Shah 92 342 2016 10.1016/j.neuron.2016.10.001 Shah, S., Lubeck, E., Zhou, W. & Cai, L. In situ transcription profiling of single cells reveals spatial organization of cells in the mouse hippocampus. Neuron 92, 342-357 (2016). 

    상세보기

12. 10.1126/science.aat5691 Wang, X. et al. Three-dimensional intact-tissue sequencing of single-cell transcriptional states. Science 361, eaat5691 (2018). 

    상세보기

13. Nat. Methods N Battich 10 1127 2013 10.1038/nmeth.2657 Battich, N., Stoeger, T. & Pelkmans, L. Image-based transcriptomics in thousands of single human cells at single-molecule resolution. Nat. Methods 10, 1127-1133 (2013). 

    상세보기

14. J. Chem. Neuroanat. K Nikouei 71 1 2016 10.1016/j.jchemneu.2015.12.004 Nikouei, K., Muñoz-Manchado, A. B. & Hjerling-Leffler, J. BCL11B/CTIP2 is highly expressed in GABAergic interneurons of the mouse somatosensory cortex. J. Chem. Neuroanat. 71, 1-5 (2016). 

    상세보기

15. Nat. Neurosci. B Tasic 19 335 2016 10.1038/nn.4216 Tasic, B. et al. Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. Nat. Neurosci. 19, 335-346 (2016). 

    상세보기

16. J. Neurosci. AA Sosunov 34 2285 2014 10.1523/JNEUROSCI.4037-13.2014 Sosunov, A. A. et al. Phenotypic heterogeneity and plasticity of isocortical and hippocampal astrocytes in the human brain. J. Neurosci. 34, 2285-2298 (2014). 

    상세보기

17. J. Neurosci. JD Cahoy 28 264 2008 10.1523/JNEUROSCI.4178-07.2008 Cahoy, J. D. et al. A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function. J. Neurosci. 28, 264-278 (2008). 

    상세보기

18. Dev. Biol. N Nakayama 232 372 2001 10.1006/dbio.2001.0200 Nakayama, N. et al. A novel chordin-like protein inhibitor for bone morphogenetic proteins expressed preferentially in mesenchymal cell lineages. Dev. Biol. 232, 372-387 (2001). 

    상세보기

19. 10.1126/science.aal3589 Vainchtein, I. D. et al. Astrocyte-derived interleukin-33 promotes microglial synapse engulfment and neural circuit development. Science 359, 1269-1273 (2018). 

    상세보기

20. Genomics MF Champliaud 70 264 2000 10.1006/geno.2000.6390 Champliaud, M. F. et al. Gene characterization of sciellin (SCEL) and protein localization in vertebrate epithelia displaying barrier properties. Genomics 70, 264-268 (2000). 

    상세보기

21. Trends Cell Biol. MB Ruzinova 13 410 2003 10.1016/S0962-8924(03)00147-8 Ruzinova, M. B. & Benezra, R. Id proteins in development, cell cycle and cancer. Trends Cell Biol. 13, 410-418 (2003). 

    상세보기

22. 10.1038/s41467-019-14198-8 Batiuk, M. Y. et al. Molecularly distinct astrocyte subpopulations spatially pattern the adult mouse brain. Nat. Commun. https://doi.org/10.1038/s41467-019-14198-8 (in the press). 

    상세보기

23. 10.1038/nature21065 Halpern, K. B. et al. Single-cell spatial reconstruction reveals global division of labour in the mammalian liver. Nature 542, 352-356 (2017). 

    상세보기

24. Nature W-P Ge 484 376 2012 10.1038/nature10959 Ge, W.-P., Miyawaki, A., Gage, F. H., Jan, Y.-N. & Jan, L. Y. Local generation of glia is a major astrocyte source in postnatal cortex. Nature 484, 376-380 (2012). 

    상세보기

25. Neuron EA Alcamo 57 364 2008 10.1016/j.neuron.2007.12.012 Alcamo, E. A. et al. Satb2 regulates callosal projection neuron identity in the developing cerebral cortex. Neuron 57, 364-377 (2008). 

    상세보기

26. Proc. Natl Acad. Sci. USA WL McKenna 112 11702 2015 10.1073/pnas.1504144112 McKenna, W. L. et al. Mutual regulation between Satb2 and Fezf2 promotes subcerebral projection neuron identity in the developing cerebral cortex. Proc. Natl Acad. Sci. USA 112, 11702-11707 (2015). 

    상세보기

27. Cereb. Cortex DP Leone 25 3406 2015 10.1093/cercor/bhu156 Leone, D. P. et al. Satb2 regulates the differentiation of both callosal and subcerebral projection neurons in the developing cerebral cortex. Cereb. Cortex 25, 3406-3419 (2015). 

    상세보기

28. Development E Hartfuss 130 4597 2003 10.1242/dev.00654 Hartfuss, E. Reelin signaling directly affects radial glia morphology and biochemical maturation. Development 130, 4597-4609 (2003). 

    상세보기

29. Development KY Kwan 139 1535 2012 10.1242/dev.069963 Kwan, K. Y., Sestan, N. & Anton, E. S. Transcriptional co-regulation of neuronal migration and laminar identity in the neocortex. Development 139, 1535-1546 (2012). 

    상세보기

30. J. Comp. Neurol MP Boyle 519 2061 2011 10.1002/cne.22655 Boyle, M. P. et al. Cell-type-specific consequences of reelin deficiency in the mouse neocortex, hippocampus, and amygdala. J. Comp. Neurol 519, 2061-2089 (2011). 

    상세보기

31. Nature Y Cui 554 323 2018 10.1038/nature25752 Cui, Y. et al. Astroglial Kir4.1 in the lateral habenula drives neuronal bursts in depression. Nature 554, 323-327 (2018). 

    상세보기

32. Neuron KW Kelley 98 306 2018 10.1016/j.neuron.2018.03.010 Kelley, K. W. et al. Kir4.1-dependent astrocyte-fast motor neuron interactions are required for peak strength. Neuron 98, 306-307 (2018). 

    상세보기

33. Neuron E Blanco-Suarez 100 1116 2018 10.1016/j.neuron.2018.09.043 Blanco-Suarez, E., Liu, T.-F., Kopelevich, A. & Allen, N. J. Astrocyte-secreted chordin-like 1 drives synapse maturation and limits plasticity by increasing synaptic GluA2 AMPA receptors. Neuron 100, 1116-1132.e13 (2018). 

    상세보기

34. 10.1126/science.aaw5202 Marshel, J. H. et al. Cortical layer-specific critical dynamics triggering perception. Science 365, eaaw5202 (2019). 

    상세보기

35. J. Cell Sci. MA Karreman 129 444 2016 10.1242/jcs.181842 Karreman, M. A. et al. Fast and precise targeting of single tumor cells in vivo by multimodal correlative microscopy. J. Cell Sci. 129, 444-456 (2016). 

    상세보기

36. Science D Velmeshev 364 685 2019 10.1126/science.aav8130 Velmeshev, D. et al. Single-cell genomics identifies cell type-specific molecular changes in autism. Science 364, 685-689 (2019). 

    상세보기

37. Nature S Gong 425 917 2003 10.1038/nature02033 Gong, S. et al. A gene expression atlas of the central nervous system based on bacterial artificial chromosomes. Nature 425, 917-925 (2003). 

    상세보기

38. J. Neurosci. JA Gorski 22 6309 2002 10.1523/JNEUROSCI.22-15-06309.2002 Gorski, J. A. et al. Cortical excitatory neurons and glia, but not GABAergic neurons, are produced in the Emx1-expressing lineage. J. Neurosci. 22, 6309-6314 (2002). 

    상세보기

39. J. Mol. Diagn. F Wang 14 22 2012 10.1016/j.jmoldx.2011.08.002 Wang, F. et al. RNAscope: a novel in situ RNA analysis platform for formalin-fixed, paraffin-embedded tissues. J. Mol. Diagn. 14, 22-29 (2012). 

    상세보기

40. J. Histochem. Cytochem. HM Kerstens 43 347 1995 10.1177/43.4.7897179 Kerstens, H. M., Poddighe, P. J. & Hanselaar, A. G. A novel in situ hybridization signal amplification method based on the deposition of biotinylated tyramine. J. Histochem. Cytochem. 43, 347-352 (1995). 

    상세보기

41. Nat. Biotechnol. A Butler 36 411 2018 10.1038/nbt.4096 Butler, A., Hoffman, P., Smibert, P., Papalexi, E. & Satija, R. Integrating single-cell transcriptomic data across different conditions, technologies, and species. Nat. Biotechnol. 36, 411-420 (2018). 

    상세보기

42. Genome Biol. BioMed. Cent. D Kim 14 R36 2013 10.1186/gb-2013-14-4-r36 Kim, D. et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. BioMed. Cent. 14, R36 (2013). 

    상세보기

43. Bioinformatics H Li 25 1754 2009 10.1093/bioinformatics/btp324 Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009). 

    상세보기

44. Bioinformatics S Anders 31 166 2015 10.1093/bioinformatics/btu638 Anders, S., Pyl, P. T. & Huber, W. HTSeq-a Python framework to work with high-throughput sequencing data. Bioinformatics 31, 166-169 (2015). 

    상세보기

45. Genome Biol. BioMed. Cent. MI Love 15 550 2014 10.1186/s13059-014-0550-8 Love, M. I., Huber, W. & Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. BioMed. Cent. 15, 550 (2014). 

    상세보기

46. Qiu, X. et al. Single-cell mRNA quantification and differential analysis with Census. Nat. Methods 14, 309-315 (2017). 

47. F1000Res. ATL Lun 5 2122 2016 Lun, A. T. L., McCarthy, D. J. & Marioni, J. C. A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor. F1000Res. 5, 2122 (2016).