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NTIS 바로가기Genome biology and evolution, v.6 no.6, 2014년, pp.1287 - 1301
Laehnemann, David (Department of Evolutionary Ecology and Genetics, University of Kiel, Germany) , Peña-Miller, Rafael (Biosciences, Geoffrey Pope Building, University of Exeter, United Kingdom) , Rosenstiel, Philip (Institute for Clinical Molecular Biology, University of Kiel, Germany) , Beardmore, Robert (Biosciences, Geoffrey Pope Building, University of Exeter, United Kingdom) , Jansen, Gunther (Department of Evolutionary Ecology and Genetics, University of Kiel, Germany) , Schulenburg, Hinrich (Department of Evolutionary Ecology and Genetics, University of Kiel, Germany)
Evolutionary adaptation can be extremely fast, especially in response to high selection intensities. A prime example is the surge of antibiotic resistance in bacteria. The genomic underpinnings of such rapid changes may provide information on the genetic processes that enhance fast responses and the...
Accardi A Miller C Secondary active transport mediated by a prokaryotic homologue of ClC Cl- channels Nature 2004 427 6977 803 807 14985752
Adams MA Jia Z Structural and biochemical evidence for an enzymatic quinone redox cycle in Escherichia coli : identification of a novel quinol monooxygenase J Biol Chem. 2005 280 9 8358 8363 15613473
Adler M Anjum M Berg OG Andersson DI Sandegren L High fitness costs and instability of gene duplications reduce rates of evolution of new genes by duplication-divergence mechanisms Mol Biol Evol. 2014 31 6 1526 1535 24659815
Adzhubei IA A method and server for predicting damaging missense mutations Nat Methods. 2010 7 4 248 249 20354512
Alekshun MN Levy SB Molecular mechanisms of antibacterial multidrug resistance Cell 2007 128 6 1037 1050 17382878
Anderson P Roth J Spontaneous tandem genetic duplications in Salmonella typhimurium arise by unequal recombination between rRNA ( rrn ) cistrons Proc Natl Acad Sci U S A. 1981 78 5 3113 3117 6789329
Andersson DI Hughes D Gene amplification and adaptive evolution in bacteria Annu Rev Genet. 2009 43 167 195 19686082
Arendt J Reznick D Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation? Trends Ecol Evol. 2008 23 1 26 32 18022278
Barbosa TM Levy SB Differential expression of over 60 chromosomal genes in Escherichia coli by constitutive expression of MarA J Bacteriol. 2000 182 12 3467 3474 10852879
Bentley R Meganathan R Biosynthesis of vitamin K (menaquinone) in bacteria Microbiol Rev. 1982 46 3 241 280 6127606
Bessman MJ Frick DN O’Handley SF The MutT proteins or “Nudix” hydrolases, a family of versatile, widely distributed, “housecleaning” enzymes J Biol Chem. 1996 271 41 25059 25062 8810257
Blair JMA Piddock LJV Structure, function and inhibition of RND efflux pumps in gram-negative bacteria: an update Curr Opin Microbiol. 2009 12 5 512 519 19664953
Bolton JL Trush MA Penning TM Dryhurst G Monks TJ Role of quinones in toxicology Chem Res Toxicol. 2000 13 3 135 160 10725110
Bonfield JK Whitwham A Gap5—editing the billion fragment sequence assembly Bioinformatics 2010 26 14 1699 1703 20513662
Burstein C Kepes A The alpha-galactosidase from Escherichia coli K12 Biochim Biophys Acta. 1971 230 1 52 63 5543331
Cannon RD Efflux-mediated antifungal drug resistance Clin Microbiol Rev. 2009 22 2 291 321 Table of Contents 19366916
Chao L Vargas C Spear BB Cox EC Transposable elements as mutator genes in evolution Nature 1983 303 5918 633 635 6304533
Christin PA Weinreich DM Besnard G Causes and evolutionary significance of genetic convergence Trends Genet. 2010 26 9 400 405 20685006
Cox MM Regulation of bacterial RecA protein function Crit Rev Biochem Mol Biol. 2007 42 1 41 63 17364684
Dettman JR Evolutionary insight from whole-genome sequencing of experimentally evolved microbes Mol Ecol. 2012 21 9 2058 2077 22332770
DiFrancesco R Bhatnagar SK Brown A Bessman MJ The interaction of DNA polymerase III and the product of the Escherichia coli mutator gene, mutD J Biol Chem. 1984 259 9 5567 5573 6325441
den Dunnen JT Antonarakis SE Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion Hum Mutat. 2000 15 1 7 12 10612815
Edwards KJ Thorn JM Daniher JA Dixon NE Ollis DL Crystallization and preliminary X-ray diffraction studies on a soluble Escherichia coli quinone oxidoreductase J Mol Biol. 1994 240 5 501 503 8046753
Eicher T Brandstätter L Pos KM Structural and functional aspects of the multidrug efflux pump AcrB Biol Chem. 2009 390 8 693 699 19453279
Elkins CA Nikaido H Substrate specificity of the RND-type multidrug efflux pumps AcrB and AcrD of Escherichia coli is determined predominately by two large periplasmic loops J Bacteriol. 2002 184 23 6490 6498 12426336
Ferenci T Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12 J Bacteriol. 2009 191 12 4025 4029 19376874
Frick DN Bessman MJ Cloning, purification, and properties of a novel NADH pyrophosphatase. Evidence for a nucleotide pyrophosphatase catalytic domain in MutT-like enzymes J Biol Chem. 1995 270 4 1529 1534 7829480
Galhardo RS Hastings PJ Rosenberg SM Mutation as a stress response and the regulation of evolvability Crit Rev Biochem Mol Biol. 2007 42 5 399 435 17917874
Gillet JP Efferth T Remacle J Chemotherapy-induced resistance by ATP-binding cassette transporter genes Biochim Biophys Acta. 2007 1775 2 237 262 17572300
Gonzalez CF Molecular basis of formaldehyde detoxification. characterization of two S-formylglutathione hydrolases from Escherichia coli , FrmB and YeiG J Biol Chem. 2006 281 20 14514 14522 16567800
Gutheil WG Holmquist B Vallee BL Purification, characterization, and partial sequence of the glutathione-dependent formaldehyde dehydrogenase from Escherichia coli : a class III alcohol dehydrogenase Biochemistry 1992 31 2 475 481 1731906
Hanatani M Physical and genetic characterization of the melibiose operon and identification of the gene products in Escherichia coli J Biol Chem. 1984 259 3 1807 1812 6319412
Harris DR Directed evolution of ionizing radiation resistance in Escherichia coli J Bacteriol. 2009 191 16 5240 5252 19502398
Hastings PJ Lupski JR Rosenberg SM Ira G Mechanisms of change in gene copy number Nat Rev Genet. 2009 10 8 551 564 19597530
Hayashi M Ohzeki H Shimada H Unemoto T NADPH-specific quinone reductase is induced by 2-methylene-4-butyrolactone in Escherichia coli Biochim Biophys Acta. 1996 1273 2 165 170 8611590
Hegreness M Kishony R Analysis of genetic systems using experimental evolution and whole-genome sequencing Genome Biol. 2007 8 1 201 17274841
Hegreness M Shoresh N Damian D Hartl D Kishony R Accelerated evolution of resistance in multidrug environments Proc Natl Acad Sci U S A. 2008 105 37 13977 13981 18779569
Herring CD Blattner FR Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR J Bacteriol. 2004 186 20 6714 6720 15466022
Higgins MK Bokma E Koronakis E Hughes C Koronakis V Structure of the periplasmic component of a bacterial drug efflux pump Proc Natl Acad Sci U S A. 2004 101 27 9994 9999 15226509
Ikeuchi Y Kitahara K Suzuki T The RNA acetyltransferase driven by ATP hydrolysis synthesizes N4-acetylcytidine of tRNA anticodon EMBO J. 2008 27 16 2194 2203 18668122
Iyer R Iverson TM Accardi A Miller C A biological role for prokaryotic ClC chloride channels Nature 2002 419 6908 715 718 12384697
Jacoby GA Mayers DL Georgiev VS History of drug-resistant microbes Antimicrobial drug resistance, infectious disease 2009 New York Humana Press 3 7
Kato J Nishimura Y Yamada M Suzuki H Hirota Y Gene organization in the region containing a new gene involved in chromosome partition in Escherichia coli J Bacteriol. 1988 170 9 3967 3977 2842295
Kawecki TJ Experimental evolution Trends Ecol Evol. 2012 27 10 547 560 22819306
Keseler IM EcoCyc: a comprehensive database of Escherichia coli biology Nucleic Acids Res. 2011 39 Database issue D583 D590 21097882
Khil PP Camerini-Otero RD Over 1000 genes are involved in the DNA damage response of Escherichia coli Mol Microbiol. 2002 44 1 89 105 11967071
Koboldt DC VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing Genome Res. 2012 22 3 568 576 22300766
Kolodner R Fishel RA Howard M Genetic recombination of bacterial plasmid DNA: effect of RecF pathway mutations on plasmid recombination in Escherichia coli J Bacteriol. 1985 163 3 1060 1066 2993230
Kuznetsova E Genome-wide analysis of substrate specificities of the Escherichia coli haloacid dehalogenase-like phosphatase family J Biol Chem. 2006 281 47 36149 36161 16990279
LeClerc JE Li B Payne WL Cebula TA High mutation frequencies among Escherichia coli and salmonella pathogens Science 1996 274 5290 1208 1211 8895473
Lenski RE Levin BR Constraints on the coevolution of bacteria and virulent phage—a model, some experiments, and predictions for natural communities Am Nat. 1985 125 4 585 602
Li M Crystal structure of the transcriptional regulator AcrR from Escherichia coli J Mol Biol. 2007 374 3 591 603 17950313
Lilley PE Stamford NP Vasudevan SG Dixon NE The 92-min region of the Escherichia coli chromosome: location and cloning of the ubiA and alr genes Gene 1993 129 1 9 16 8335265
Lindgren PK Karlsson A Hughes D Mutation rate and evolution of fluoroquinolone resistance in Escherichia coli isolates from patients with urinary tract infections Antimicrob Agents Chemother. 2003 47 10 3222 3232 14506034
Liu T CsoR is a novel Mycobacterium tuberculosis copper-sensing transcriptional regulator Nat Chem Biol. 2007 3 1 60 68 17143269
Losos JB Convergence, adaptation, and constraint Evolution 2011 65 7 1827 1840 21729041
Lovett ST Encoded errors: mutations and rearrangements mediated by misalignment at repetitive DNA sequences Mol Microbiol. 2004 52 5 1243 1253 15165229
Ma D Alberti M Lynch C Nikaido H Hearst JE The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals Mol Microbiol. 1996 19 1 101 112 8821940
Ma D Molecular cloning and characterization of acrA and acrE genes of Escherichia coli J Bacteriol. 1993 175 19 6299 6313 8407802
Ma D Genes acrA and acrB encode a stress-induced efflux system of Escherichia coli Mol Microbiol. 1995 16 1 45 55 7651136
MacLean RC Hall AR Perron GG Buckling A The population genetics of antibiotic resistance: integrating molecular mechanisms and treatment contexts Nat Rev Genet. 2010 11 6 405 414 20479772
MacLean RC Torres-Barceló C Moxon R Evaluating evolutionary models of stress-induced mutagenesis in bacteria Nat Rev Genet. 2013 14 3 221 227 23400102
Maneewannakul K Levy SB Identification for mar mutants among quinolone-resistant clinical isolates of Escherichia coli Antimicrob Agents Chemother. 1996 40 7 1695 1698 8807064
Matic I Highly variable mutation rates in commensal and pathogenic Escherichia coli Science 1997 277 5333 1833 1834 9324769
McLennan AG The Nudix hydrolase superfamily Cell Mol Life Sci. 2006 63 2 123 143 16378245
Mikolosko J Bobyk K Zgurskaya HI Ghosh P Conformational flexibility in the multidrug efflux system protein AcrA Structure 2006 14 3 577 587 16531241
Morrison PT Lovett ST Gilson LE Kolodner R Molecular analysis of the Escherichia coli recO gene J Bacteriol. 1989 171 7 3641 3649 2544549
Mott ML Berger JM DNA replication initiation: mechanisms and regulation in bacteria Nat Rev Microbiol. 2007 5 5 343 354 17435790
Nagao Y Purification and analysis of the structure of alpha-galactosidase from Escherichia coli Biochem Biophys Res Commun. 1988 151 1 236 241 2831880
Newton NA Cox GB Gibson F The function of menaquinone (vitamin K 2) in Escherichia coli K-12 Biochim Biophys Acta. 1971 244 1 155 166 4330424
Nicoloff H Andersson DI Lon protease inactivation, or translocation of the lon gene, potentiate bacterial evolution to antibiotic resistance Mol Microbiol. 2013 90 1233 1248 24325250
Nicoloff H Perreten V Levy SB Increased genome instability in Escherichia coli lon mutants: relation to emergence of multiple-antibiotic-resistant (Mar) mutants caused by IS elements and large tandem genomic amplifications Antimicrob Agents Chemother. 2007 51 4 1293 1303 17220404
Nicoloff H Perreten V McMurry LM Levy SB Role for tandem duplication and lon protease in AcrAB-TolC-dependent multiple antibiotic resistance (Mar) in an Escherichia coli mutant without mutations in marRAB or acrRAB J Bacteriol. 2006 188 12 4413 4423 16740948
Nikaido H Takatsuka Y Mechanisms of RND multidrug efflux pumps Biochim Biophys Acta. 2009 1794 5 769 781 19026770
Nishino K Yamaguchi A Analysis of a complete library of putative drug transporter genes in Escherichia coli J Bacteriol. 2001 183 20 5803 5812 11566977
Oliver A Cantón R Campo P Baquero F Blázquez J High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection Science 2000 288 5469 1251 1254 10818002
Palmer DR Unexpected divergence of enzyme function and sequence: “N-acylamino acid racemase” is o-succinylbenzoate synthase Biochemistry 1999 38 14 4252 4258 10194342
Palumbi SR Humans as the world’s greatest evolutionary force Science 2001 293 5536 1786 1790 11546863
Partridge JD Characterization of the Escherichia coli K-12 ydhYVWXUT operon: regulation by FNR, NarL and NarP Microbiology 2008 154 Pt 2 608 618 18227264
Peña-Miller R When the most potent combination of antibiotics selects for the greatest bacterial load: the smile-frown transition PLoS Biol. 2013 11 4 e1001540 23630452
Plotkin JB Kudla G Synonymous but not the same: the causes and consequences of codon bias Nat Rev Genet. 2011 12 1 32 42 21102527
Proudfoot M General enzymatic screens identify three new nucleotidases in Escherichia coli . biochemical characterization of SurE, YfbR, and YjjG J Biol Chem. 2004 279 52 54687 54694 15489502
Reed JL Vo TD Schilling CH Palsson BO An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) Genome Biol. 2003 4 9 R54 12952533
Reizer J Reizer A Saier MH A functional superfamily of sodium/solute symporters Biochim Biophys Acta. 1994 1197 2 133 166 8031825
Rodrigue A Effantin G Mandrand-Berthelot MA Identification of rcnA ( yohM ), a nickel and cobalt resistance gene in Escherichia coli J Bacteriol. 2005 187 8 2912 2916 15805538
Ross D Quinone reductases multitasking in the metabolic world Drug Metab Rev. 2004 36 3–4 639 654 15554240
Roth JR Escherichia coli and Salmonella typhimurium : cellular and molecular biology 1996 2nd ed. Chapter rearrangements of the bacterial chromosome: formation and applications. Washington (DC): American Society for Microbiology. p. 2256–2276
Routh MD Su CC Zhang Q Yu EW Structures of AcrR and CmeR: insight into the mechanisms of transcriptional repression and multi-drug recognition in the TetR family of regulators Biochim Biophys Acta. 2009 1794 5 844 851 19130905
Samaluru H SaiSree L Reddy M Role of SufI (FtsP) in cell division of Escherichia coli : evidence for its involvement in stabilizing the assembly of the divisome J Bacteriol. 2007 189 22 8044 8052 17766410
Sampaio MM Phosphotransferase-mediated transport of the osmolyte 2-o-alpha-mannosyl-d-glycerate in Escherichia coli occurs by the product of the mngA ( hrsA ) gene and is regulated by the mngR ( farR ) gene product acting as repressor J Biol Chem. 2004 279 7 5537 5548 14645248
Sanchez CP Dave A Stein WD Lanzer M Transporters as mediators of drug resistance in Plasmodium falciparum Int J Parasitol. 2010 40 10 1109 1118 20399785
Sandegren L Andersson DI Bacterial gene amplification: implications for the evolution of antibiotic resistance Nat Rev Microbiol. 2009 7 8 578 588 19609259
Schenk MF Szendro IG Krug J de Visser JAGM Quantifying the adaptive potential of an antibiotic resistance enzyme PLoS Genet. 2012 8 6 e1002783 22761587
Scheuermann R Tam S Burgers PM Lu C Echols H Identification of the epsilon-subunit of Escherichia coli DNA polymerase III holoenzyme as the dnaQ gene product: a fidelity subunit for DNA replication Proc Natl Acad Sci U S A. 1983 80 23 7085 7089 6359162
Schmitt R Analysis of melibiose mutants deficient in alpha-galactosidase and thiomethylgalactoside permease II in Escherichia coli K-12 J Bacteriol. 1968 96 2 462 471 4877127
Selmecki A Gerami-Nejad M Paulson C Forche A Berman J An isochromosome confers drug resistance in vivo by amplification of two genes, ERG11 and TAC1 Mol Microbiol. 2008 68 3 624 641 18363649
Seoane AS Levy SB Characterization of MarR, the repressor of the multiple antibiotic resistance ( mar ) operon in Escherichia coli J Bacteriol. 1995 177 12 3414 3419 7768850
Serres MH A functional update of the Escherichia coli K-12 genome Genome Biol. 2001 2 9 RESEARCH0035
Shabalina SA Spiridonov NA Kashina A Sounds of silence: synonymous nucleotides as a key to biological regulation and complexity Nucleic Acids Res. 2013 41 4 2073 2094 23293005
Sharma V Meganathan R Hudspeth ME Menaquinone (vitamin K2) biosynthesis: cloning, nucleotide sequence, and expression of the menC gene from Escherichia coli J Bacteriol. 1993 175 15 4917 4921 8335646
Siguier P Filée J Chandler M Insertion sequences in prokaryotic genomes Curr Opin Microbiol. 2006 9 5 526 531 16935554
Sniegowski PD Gerrish PJ Lenski RE Evolution of high mutation rates in experimental populations of E. coli Nature 1997 387 6634 703 705 9192894
Stapley J Adaptation genomics: the next generation Trends Ecol Evol. 2010 25 12 705 712 20952088
Su CC Rutherford DJ Yu EW Characterization of the multidrug efflux regulator AcrR from Escherichia coli Biochem Biophys Res Commun. 2007 361 1 85 90 17644067
Sulavik MC Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes Antimicrob Agents Chemother. 2001 45 4 1126 1136 11257026
Symmons MF Bokma E Koronakis E Hughes C Koronakis V The assembled structure of a complete tripartite bacterial multidrug efflux pump Proc Natl Acad Sci U S A. 2009 106 17 7173 7178 19342493
Taddei F Role of mutator alleles in adaptive evolution Nature 1997 387 6634 700 702 9192893
Tenaillon O Denamur E Matic I Evolutionary significance of stress-induced mutagenesis in bacteria Trends Microbiol. 2004 12 6 264 270 15165604
Tenaillon O The molecular diversity of adaptive convergence Science 2012 335 6067 457 461 22282810
Thompson TB Evolution of enzymatic activity in the enolase superfamily: structure of o-succinylbenzoate synthase from Escherichia coli in complex with Mg2+ and o-succinylbenzoate Biochemistry 2000 39 35 10662 10676 10978150
Thorn JM Barton JD Dixon NE Ollis DL Edwards KJ Crystal structure of Escherichia coli QOR quinone oxidoreductase complexed with NADPH J Mol Biol. 1995 249 4 785 799 7602590
Titz B Häuser R Engelbrecher A Uetz P The Escherichia coli protein YjjG is a house-cleaning nucleotidase in vivo FEMS Microbiol Lett. 2007 270 1 49 57 17286574
Toprak E Evolutionary paths to antibiotic resistance under dynamically sustained drug selection Nat Genet. 2011 44 1 101 105 22179135
Wake DB Wake MH Specht CD Homoplasy: from detecting pattern to determining process and mechanism of evolution Science 2011 331 6020 1032 1035 21350170
Walsh C Molecular mechanisms that confer antibacterial drug resistance Nature 2000 406 6797 775 781 10963607
Walsh C Antibiotics: actions, origins, resistance 2003 Washington (DC) ASM Press
Wang H Dzink-Fox JL Chen M Levy SB Genetic characterization of highly fluoroquinolone-resistant clinical Escherichia coli strains from China: role of acrR mutations Antimicrob Agents Chemother. 2001 45 5 1515 1521 11302820
Webber MA Piddock LJ Absence of mutations in marRAB or soxRS in acrB -overexpressing fluoroquinolone-resistant clinical and veterinary isolates of Escherichia coli Antimicrob Agents Chemother. 2001 45 5 1550 1552 11302826
Wei Z Wang W Hu P Lyon GJ Hakonarson H SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data Nucleic Acids Res. 2011 39 19 e132 21813454
Wilson DM Wilson TH Cation specificity for sugar substrates of the melibiose carrier in Escherichia coli Biochim Biophys Acta. 1987 904 2 191 200 3311166
Wilson TH Ding PZ Sodium-substrate cotransport in bacteria Biochim Biophys Acta. 2001 1505 1 121 130 11248194
Wu TH Clarke CH Marinus MG Specificity of Escherichia coli mutD and mutL mutator strains Gene 1990 87 1 1 5 2185133
Yazyu H Nucleotide sequence of the melB gene and characteristics of deduced amino acid sequence of the melibiose carrier in Escherichia coli J Biol Chem. 1984 259 7 4320 4326 6323466
Ye K Schulz MH Long Q Apweiler R Ning Z Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads Bioinformatics 2009 25 21 2865 2871 19561018
Zgurskaya HI Nikaido H AcrA is a highly asymmetric protein capable of spanning the periplasm J Mol Biol. 1999 285 1 409 420 9878415
Zgurskaya HI Nikaido H Cross-linked complex between oligomeric periplasmic lipoprotein AcrA and the inner-membrane-associated multidrug efflux pump AcrB from Escherichia coli J Bacteriol. 2000 182 15 4264 4267 10894736
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