$\require{mediawiki-texvc}$

연합인증

연합인증 가입 기관의 연구자들은 소속기관의 인증정보(ID와 암호)를 이용해 다른 대학, 연구기관, 서비스 공급자의 다양한 온라인 자원과 연구 데이터를 이용할 수 있습니다.

이는 여행자가 자국에서 발행 받은 여권으로 세계 각국을 자유롭게 여행할 수 있는 것과 같습니다.

연합인증으로 이용이 가능한 서비스는 NTIS, DataON, Edison, Kafe, Webinar 등이 있습니다.

한번의 인증절차만으로 연합인증 가입 서비스에 추가 로그인 없이 이용이 가능합니다.

다만, 연합인증을 위해서는 최초 1회만 인증 절차가 필요합니다. (회원이 아닐 경우 회원 가입이 필요합니다.)

연합인증 절차는 다음과 같습니다.

최초이용시에는
ScienceON에 로그인 → 연합인증 서비스 접속 → 로그인 (본인 확인 또는 회원가입) → 서비스 이용

그 이후에는
ScienceON 로그인 → 연합인증 서비스 접속 → 서비스 이용

연합인증을 활용하시면 KISTI가 제공하는 다양한 서비스를 편리하게 이용하실 수 있습니다.

DNA barcoding and taxonomy: dark taxa and dark texts 원문보기

Philosophical transactions. Biological sciences, v.371 no.1702, 2016년, pp.20150334 -   

Page, Roderic D. M.

Abstract AI-Helper 아이콘AI-Helper

Both classical taxonomy and DNA barcoding are engaged in the task of digitizing the living world. Much of the taxonomic literature remains undigitized. The rise of open access publishing this century and the freeing of older literature from the shackles of copyright have greatly increased the online...

주제어

참고문헌 (45)

  1. 1 Strasser BJ 2008 GenBank–natural history in the 21st century? Science 322 , 537 – 538 . ( 10.1126/science.1163399 ) 18948528 

  2. 2 Strasser BJ 2011 The experimenter's museum: GenBank, natural history, and the moral economies of biomedicine . Isis 2011 , 60 – 96 . ( 10.1086/658657 ) 

  3. 3 Page RDM 2011 Extracting scientific articles from a large digital archive: BioStor and the Biodiversity Heritage Library . BMC Bioinformatics 12 , 187 ( 10.1186/1471-2105-12-187 ) 21605356 

  4. 4 Lathe W , Williams J , Mangan M , Karolchik D 2008 Genomic data resources: challenges and promises . Nat. Educ. 1 , 2 . 

  5. 5 Ariño AH 2010 Approaches to estimating the universe of natural history collections data . Biodivers. Inf . 7 ( 10.17161/bi.v7i2.3991 ) 

  6. 6 Caley MJ , Fisher R , Mengersen K 2014 Global species richness estimates have not converged . Trends Ecol. Evol. 29 , 187 – 188 . ( 10.1016/j.tree.2014.02.002 ) 24569101 

  7. 7 Costello MJ , Wilson S , Houlding B 2011 Predicting total global species richness using rates of species description and estimates of taxonomic effort . Syst. Biol. 61 , 871 – 883 . ( 10.1093/sysbio/syr080 ) 21856630 

  8. 8 Joppa LN , Roberts DL , Pimm SL 2011 The population ecology and social behaviour of taxonomists . Trends Ecol. Evol. 26 , 551 – 553 . ( 10.1016/j.tree.2011.07.010 ) 21862170 

  9. 9 Aboukhalil R 2014 The rising trend in authorship . The winnower . ( 10.15200/winn.141832.26907 ) 

  10. 10 Sangster G , Luksenburg JA 2014 Declining rates of species described per taxonomist: slowdown of progress or a side-effect of improved quality in taxonomy? Syst. Biol. 64 , 144 – 151 . ( 10.1093/sysbio/syu069 ) 25190593 

  11. 11 Stoev P et al. 2013 Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data . BDJ 1 , e1013 ( 10.3897/bdj.1.e1013 ) 

  12. 12 Akkari N , Enghoff H , Metscher BD 2015 A new dimension in documenting new species: high-detail imaging for myriapod taxonomy and first 3D cybertype of a new millipede species (Diplopoda, Julida, Julidae) . PLoS ONE 10 , e0135243 ( 10.1371/journal.pone.0135243 ) 26309113 

  13. 13 Page RDM 2013 BioNames: linking taxonomy, texts, and trees . PeerJ 1 , e190 ( 10.7717/peerj.190 ) 24244913 

  14. 14 Blaxter M 2003 Molecular systematics: counting angels with DNA . Nature 421 , 122 – 124 . ( 10.1038/421122a ) 12520286 

  15. 15 Pentcheff ND 2010 Copyrights and digitizing the systematic literature: the horror … the horror… . Nat. Preced. ( 10.1038/npre.2010.4644 ) 

  16. 16 Aiden E , Michel J-B 2013 Uncharted: big data as a lens on human culture. New York, NY : Riverhead Books . 

  17. 17 May RM 1988 How many species are there on Earth? Science 241 , 1441 – 1449 . ( 10.1126/science.241.4872.1441 ) 17790039 

  18. 18 Michel J-B et al. 2010 Quantitative analysis of culture using millions of digitized books . Science 331 , 176 – 182 . ( 10.1126/science.1199644 ) 21163965 

  19. 19 Agosti D , Egloff W 2009 Taxonomic information exchange and copyright: the Plazi approach . BMC Res. Notes 2 , 53 ( 10.1186/1756-0500-2-53 ) 19331688 

  20. 20 Patterson DJ , Egloff W , Agosti D , Eades D , Franz N , Hagedorn G , Rees JA , Remsen DP 2014 Scientific names of organisms: attribution, rights, and licensing . BMC Res. Notes 7 , 79 ( 10.1186/1756-0500-7-79 ) 24495358 

  21. 21 Penev L et al. 2010 Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples . ZooKeys 50 , 1 – 16 . ( 10.3897/zookeys.50.538 ) 

  22. 22 Miller J et al. 2015 Integrating and visualizing primary data from prospective and legacy taxonomic literature . Biodiversity Data J. 3 , e5063 ( 10.3897/bdj.3.e5063 ) 

  23. 23 Gwinn NE , Rinaldo C 2009 The Biodiversity Heritage Library: sharing biodiversity literature with the world . IFLA J. 35 , 25 – 34 . ( 10.1177/0340035208102032 ) 

  24. 24 Edwards MA , Thorne MJ 1993 Reply to ‘Supraspecific names of molluscs: a quantitative review’ . Malacologia 35 , 153 – 154 . 

  25. 25 Thorne J 2003 Zoological Record and registration of new names in zoology . Bull. Zool. Nomenclature 60 , 7 – 11 . 

  26. 26 Bouchet P , Rocroi J-P 1992 Supraspecific names of molluscs: a quantitative review . Malacologia 34 , 75 – 86 . 

  27. 27 Benson DA , Cavanaugh M , Clark K , Karsch-Mizrachi I , Lipman DJ , Ostell J , Sayers EW 2012 GenBank . Nucleic Acids Res . 41 , D36 – D42 . ( 10.1093/nar/gks1195 ) 23193287 

  28. 28 Altschul SF , Gish W , Miller W , Myers EW , Lipman DJ 1990 Basic local alignment search tool . J. Mol. Biol. 215 , 403 – 410 . ( 10.1016/s0022-2836(05)80360-2 ) 2231712 

  29. 29 Ratnasingham S , Hebert PDN 2007 BOLD: the Barcode of Life Data System ( http://www.barcodinglife.org ). Mol. Ecol. Notes 7 , 355 – 364 . ( 10.1111/j.1471-8286.2007.01678.x ) 18784790 

  30. 30 Barrett T et al. 2011 BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata . Nucleic Acids Res. 40 , D57 – D63 . ( 10.1093/nar/gkr1163 ) 22139929 

  31. 31 Parr CS , Guralnick R , Cellinese N , Page RDM 2012 Evolutionary informatics: unifying knowledge about the diversity of life . Trends Ecol. Evol . 27 , 94 – 103 . ( 10.1016/j.tree.2011.11.001 ) 22154516 

  32. 32 Patterson DJ , Cooper J , Kirk PM , Pyle RL , Remsen DP 2010 Names are key to the big new biology . Trends Ecol. Evol . 25 , 686 – 691 . ( 10.1016/j.tree.2010.09.004 ) 20961649 

  33. 33 Kennedy J 2003 Supporting taxonomic names in cell and molecular biology databases . OMICS J. Integr. Biol. 7 , 13 – 16 . ( 10.1089/153623103322006508 ) 

  34. 34 Page RDM 2015 Visualising geophylogenies in web maps using GeoJSON . PLoS Curr . ( 10.1371/currents.tol.8f3c6526c49b136b98ec28e00b570a1e ) 

  35. 35 Ratnasingham S , Hebert PDN 2013 A DNA-based registry for all animal species: the Barcode Index Number (BIN) system . PLoS ONE 8 , e66213 ( 10.1371/journal.pone.0066213 ) 23861743 

  36. 36 Federhen S 2014 Type material in the NCBI taxonomy database . Nucleic Acids Res . 43 , D1086 – D1098 . ( 10.1093/nar/gku1127 ) 25398905 

  37. 37 Pullan MR , Watson MF , Kennedy JB , Raguenaud C , Hyam R , Raguenaud C 2000 The Prometheus Taxonomic Model: a practical approach to representing multiple classifications . Taxon 49 , 55 ( 10.2307/1223932 ) 

  38. 38 Guralnick RP et al. 2015 Community next steps for making globally unique identifiers work for biocollections data . ZooKeys 494 , 133 – 154 . ( 10.3897/zookeys.494.9352 ) 

  39. 39 Hyam R , Drinkwater RE , Harris DJ 2012 Stable citations for herbarium specimens on the internet: an illustration from a taxonomic revision of Duboscia (Malvaceae) . Phytotaxa 73 , 17 – 30 . ( 10.11646/phytotaxa.73.1.4 ) 

  40. 40 Guralnick R , Conlin T , Deck J , Stucky BJ , Cellinese N 2014 The trouble with triplets in biodiversity informatics: a data-driven case against current identifier practices . PLoS ONE 9 , e114069 ( 10.1371/journal.pone.0114069 ) 25470125 

  41. 41 GBIF . 2015 Zoologische Staatssammlung Muenchen - International Barcode of Life (iBOL) - Barcode of Life Project specimen data. ( 10.15468/tfpnkp ) 

  42. 42 GBIF . 2014 Geographically tagged INSDC sequences. ( 10.15468/cndomv ) 

  43. 43 Page RDM 2008 Biodiversity informatics: the challenge of linking data and the role of shared identifiers . Brief. Bioinformatics 9 , 345 – 354 . ( 10.1093/bib/bbn022 ) 18445641 

  44. 44 Page RDM 2016 Surfacing the deep data of taxonomy . ZooKeys 550 , 247 – 260 . ( 10.3897/zookeys.550.9293 ) 

  45. 45 Jones T , Baxter D , Hagedorn G , Legler B , Gilbert E , Thiele K , Vargas-Rodriguez Y , Urbatsch L 2014 Trends in access of plant biodiversity data revealed by Google Analytics . Biodiversity Data J. 2 , e1558 ( 10.3897/bdj.2.e1558 ) 

관련 콘텐츠

오픈액세스(OA) 유형

GOLD(Hybrid)

저자가 APC(Article Processing Charge)를 지불한 논문에 한하여 자유로운 이용이 가능한, hybrid 저널에 출판된 논문

저작권 관리 안내
섹션별 컨텐츠 바로가기

AI-Helper ※ AI-Helper는 오픈소스 모델을 사용합니다.

AI-Helper 아이콘
AI-Helper
안녕하세요, AI-Helper입니다. 좌측 "선택된 텍스트"에서 텍스트를 선택하여 요약, 번역, 용어설명을 실행하세요.
※ AI-Helper는 부적절한 답변을 할 수 있습니다.

선택된 텍스트

맨위로