$\require{mediawiki-texvc}$

연합인증

연합인증 가입 기관의 연구자들은 소속기관의 인증정보(ID와 암호)를 이용해 다른 대학, 연구기관, 서비스 공급자의 다양한 온라인 자원과 연구 데이터를 이용할 수 있습니다.

이는 여행자가 자국에서 발행 받은 여권으로 세계 각국을 자유롭게 여행할 수 있는 것과 같습니다.

연합인증으로 이용이 가능한 서비스는 NTIS, DataON, Edison, Kafe, Webinar 등이 있습니다.

한번의 인증절차만으로 연합인증 가입 서비스에 추가 로그인 없이 이용이 가능합니다.

다만, 연합인증을 위해서는 최초 1회만 인증 절차가 필요합니다. (회원이 아닐 경우 회원 가입이 필요합니다.)

연합인증 절차는 다음과 같습니다.

최초이용시에는
ScienceON에 로그인 → 연합인증 서비스 접속 → 로그인 (본인 확인 또는 회원가입) → 서비스 이용

그 이후에는
ScienceON 로그인 → 연합인증 서비스 접속 → 서비스 이용

연합인증을 활용하시면 KISTI가 제공하는 다양한 서비스를 편리하게 이용하실 수 있습니다.

Comparison of DNA extraction methods for DNA barcoding of non-biting midges
DNAバーコーディングを目的としたユスリカDNA抽出方法の比較 원문보기

陸水學雜誌 = Japan journal of limnology, v.78 no.1, 2017년, pp.13 - 26  

KONDO, Natsuko I. (Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies) ,  OKUDA, Shiori (Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies) ,  OHBAYASHI, Kako (Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies) ,  UENO, Ryuhei (Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies) ,  TAKAMURA, Kenzi (Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies)

초록이 없습니다.

참고문헌 (43)

  1. 10.1016/j.tree.2014.04.003 Bohmann, K., A. Evans, M. T. P. Gilbert, G. R. Carvalho, S. Creer, M. Knapp, D. W. Yu and M. de Bruyn (2014): Environmental DNA for wildlife biology and biodiversity monitoring. Trends in Ecology and Evolution, 29: 358-367. 

  2. 1755-098X Molecular Ecology Resources Brodin Y. 13 996 2013 10.1111/1755-0998.12053 Brodin, Y., G. Ejdung, J. Strandberg and T. Lyrholm (2013): Improving environmental and biodiversity monitoring in the Baltic Sea using DNA barcoding of Chironomidae (Diptera). Molecular Ecology Resources, 13: 996-1004. 

  3. 10.1111/j.1365-2427.2007.01840.x Carew, M. E., V. Pettigrove, R. L. Cox and A. A. Hoffmann (2007): The response of Chironomidae to sediment pollution and other environmental characteristics in urban wetlands. Freshwater Biology, 52: 2444-2462. 

  4. Cranston, P. S. (1995): Introduction. In The Chironomidae: Biology and ecology of non-biting midges, Armitage, P. D., Cranston, P. S. and Pinder, L. C. V. (eds.): 1-7.Springer, Dordrecht. 

  5. 10.1111/j.1365-3113.2011.00603.x Cranston, P. S., N. B. Hardy and G. E. Morse (2012): A dated molecular phylogeny for the Chironomidae (Diptera). Systematic Entomology, 37: 172-188. 

  6. 10.1111/j.1365-2583.1996.tb00036.x Dillon, N., D. Austin and E. Bartowsky (1996): Comparison of preservation techniques for DNA extraction from hymenopterous insects. Insect Molecular Biology, 5: 21-24. 

  7. 10.1007/s13127-010-0034-y Ekrem, T., E. Stur and P. D. N. Hebert (2010): Females do count: documenting Chironomidae (Diptera) species diversity using DNA barcoding. Organisms Diversity and Evolution, 10: 397-408. 

  8. Favret, C. (2005): A new non-destructive DNA extracion and specimen clearing technique for aphids (Hemiptera). The Proceedings of the Entomological Society of Washington, 107: 469-470. 

  9. 10.1007/s10750-007-9130-1 Ferrington, L., Jr. (2008): Global diversity of non-biting midges (Chironomidae; Insecta-Diptera) in freshwater. Hydrobiologia, 595: 447-455. 

  10. 10.1046/j.1365-294x.1999.00795.x Fukatsu, T. (1999): Acetone preservation: a practical technique for molecular analysis. Molecular Ecology, 8: 1935-1945. 

  11. 10.1371/journal.pone.0000272 Gilbert, M. T. P., W. Moore, L. Melchior and M. Worobey (2007): DNA extraction from dry museum beetles without conferring external morphological damage. PLoS ONE, 2: e272. 

  12. 10.1139/f92-302 Griffiths, R. W. (1992): Effects of pH on community dynamics of chironomidae in a large river near sudbury, Ontario. Canadian Journal of Fisheries and Aquatic Sciences, 49: 76-86. 

  13. 1081-1710 Journal of Vector Ecology Gutiérrez-López R. 40 11 2015 10.1111/jvec.12127 Gutiérrez-López, R., J. Martínez-de la Puente, L. Gangoso, R. C. Soriguer and J. Figuerola (2015): Comparison of manual and semi-automatic DNA extraction protocols for the barcoding characterization of hematophagous louse flies (Diptera: Hippoboscidae). Journal of Vector Ecology, 40: 11-15. 

  14. 10.1098/rstb.2005.1727 Hajibabaei, M., J. R. Dewaard, N. V. Ivanova, S. Ratnasingham, R. T. Dooh, S. L. Kirk, P. M. Mackie and P. D. N. Hebert (2005): Critical factors for assembling a high volume of DNA barcodes. Philosophical Transactions of the Royal Society of London B: Biological Sciences, 360: 1959-1967. 

  15. 10.1016/j.tig.2007.02.001 Hajibabaei, M., G. A. C. Singer, P. D. N. Hebert and D. Hickey (2007): DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends in Genetics, 23: 167-172. 

  16. 10.1098/rspb.2002.2218 Hebert, P. D. N., A. Cywinska, S. L. Ball and J. R. Dewaard (2003): Biological identifications through DNA barcodes. Proceedings of the Royal Society of London B: Biological Sciences, 270: 313-321. 

  17. 10.1073/pnas.0406166101 Hebert, P. D. N., E. H. Penton, J. M. Burns, D. H. Janzen, W. Hallwachs (2004): Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator . Proceedings of the National Academy of Sciences of the United States of America, 41: 14812-14817. 

  18. 10.1007/s10750-005-0977-8 Helson, J. E., D. D. Williams and D. Turner (2006): Larval chironomid community organization in four tropical rivers: human impacts and longitudinal zonation. Hydrobiologia, 559: 413-431. 

  19. Inoue, Y., C. Komori, T. Kobayashi, N. Kondo, R. Ueno and K. Takamura (2015): Nanocladius ( Plecopteracoluthus ) shigaensis sp. nov. (Chironomidae: Orthocladiinae) whose larvae are phoretic on nymphs of stoneflies (Plecoptera) from Japan. Zootaxa, 3931: 551-567. 

  20. 10.1111/j.1479-8298.2011.00449.x Jinbo, U., T. Kato and M. Ito (2011): Current progress in DNA barcoding and future implications for entomology. Entomological Science, 14: 107-124. 

  21. 2045-7758 Ecology and Evolution Jo H. 4 219 2014 10.1002/ece3.921 Jo, H., J. -A. Gim, K. -W. Jeong, H. -S. Kim and G . -J. Joo (2014): Application of DNA barcoding for identification of freshwater carnivorous fish diets: Is number of prey items dependent on size class for Micropterus salmoides ? Ecology and Evolution, 4: 219-229. 

  22. 0219-1032 Molecules and Cells Kim S. 33 9 2012 10.1007/s10059-012-2151-2 Kim, S., K. -H. Song, H. -I. Ree and W. Kim (2012): A DNA barcode library for Korean Chironomidae (Insecta: Diptera) and indexes for defining barcode gap. Molecules and Cells, 33: 9-17. 

  23. 10.1111/ens.12212 Kondo, N. I., R. Ueno, K. Ohbayashi and K. Takamura (2016b): DNA barcoding supports reclassification of Japanese Chironomus species (Diptera: Chironomidae). Entomological science, 19: 337-350. 

  24. 1755-098X Molecular Ecology Resources Kranzfelder P. 16 353 2016 10.1111/1755-0998.12446 Kranzfelder, P., T. Ekrem and E. Stur (2016): Trace DNA from insect skins: a comparison of five extraction protocols and direct PCR on chironomid pupal exuviae. Molecular Ecology Resources, 16: 353-363. 

  25. 1742-9994 Frontiers in Zoology Leray M. 10 34 2013 10.1186/1742-9994-10-34 Leray, M., J. Yang, C. Meyer, S. Mills, N. Agudelo, V. Ranwez, J. Boehm and R. Machida (2013): A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents. Frontiers in Zoology, 10: 34. 

  26. 10.1038/362709a0 Lindahl, (1993): Instability and decay of the primary structure of DNA. Nature, 362: 709-715. 

  27. 0962-1075 Insect Molecular Biology Martins J. 16 777 2007 10.1111/j.1365-2583.2007.00771.x Martins, J., S. E. Solomon, A. S. Mikheyev, U. G. Mueller, A. Ortiz and M. Bacci (2007): Nuclear mitochondrial-like sequences in ants: evidence from Atta cephalotes (Formicidae: Attini). Insect molecular biology, 16: 777-784. 

  28. 10.1111/cla.12115 Meier, R., W. Wong, A. Srivathsan and M. Foo (2015): $1 DNA barcodes for reconstructing complex phenomes ad finding rare species in specimen-rich samples. Cladistics, 32: 100-110. 

  29. 1471-2164 BMC Genomics Meusnier I. 9 214 2008 10.1186/1471-2164-9-214 Meusnier, I., G. Singer, J. -F. Landry, D. Hickey, P. Hebert and M. Hajibabaei (2008): A universal DNA mini-barcode for biodiversity analysis. BMC Genomics, 9: 214. 

  30. Montero-Pau, J., Gómez, A. and Muñoz, J. (2008): Application of an inexpensive and high-throughput genomic DNA extraction method for the molecular ecology of zooplanktonic diapausing eggs. Limnology and Oceanography: Methods, 6: 218-222. 

  31. 10.1073/pnas.89.7.2699 O'Neill, S. L., R. Giordano, A. M. Colbert, T. L. Karr and H. M. Robertson (1992): 16S rRNA phylogenetic analysis of the bacterial endosymbionts associated with cytoplasmic incompatibility in insects. Proceedings of the National Academy of Sciences of the United States of America, 89: 2699-2702. 

  32. 1471-8278 Molecular Ecology Notes Pons J. 6 623 2006 10.1111/j.1471-8286.2006.01353.x Pons, J. (2006): DNA-based identification of preys from non-destructive, total DNA extractions of predators using arthropod universal primers. Molecular Ecology Notes, 6: 623-626. 

  33. Quast, C., E. Pruesse, P. Yilmaz, J. Gerken, T. Schweer, P. Yarza, J. Peplies and F. O. Glöckner (2013): The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Research, 41: D590-D593. 

  34. 10.1111/j.1471-8286.2007.01678.x Ratnasingham, S. and P. D. Hebert (2007): BOLD: The barcode of life data system (http://www.barcodinglife.org ). Molecular Ecology Notes, 7: 355-364. 

  35. 10.1371/journal.pone.0066213 Ratnasingham, S. and P. D. N. Hebert (2013): A DNA-based registry for all animal species: the barcode index number (BIN) system. PLoS ONE, 8: e66213. 

  36. R Core Team (2012): R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org/. 

  37. 1536-2442 Journal of Insect Science Rusterholz H. -P. 15 120 2015 10.1093/jisesa/iev099 Rusterholz, H. -P., Ursenbacher, S., Coray, A., Weibel, U. and Baur, B. (2015): DNA quantity and quality in remnants of traffic-killed specimens of an endangered longhorn beetle: a comparison of different methods. Journal of Insect Science, 15: 120. 

  38. 10.1111/j.1600-0587.1979.tb00683.x Sæther, O. A. (1979): Chironomid communities as water quality indicators. Ecography, 2: 65-74. 

  39. 0737-4038 Molecular Biology and Evolution Tamura K. 30 2725 2013 10.1093/molbev/mst197 Tamura, K., G. Stecher, D. Peterson, A. Filipski and S. Kumar (2013): MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution, 30: 2725-2729. 

  40. 10.2144/00291bm09 Truett, G. E., P. Heeger, R. L. Mynatt, A. A. Truett, J. A. Walker and M. L. Warman (2000): Preparation of PCR-quality mouse genomic DNA with hot sodium hydroxide and tris (HotSHOT). BioTechniques, 29: 52-54. 

  41. 1755-098X Molecular Ecology Resources Van Houdt J. K. J. 10 459 2010 10.1111/j.1755-0998.2009.02800.x Van Houdt, J. K. J., F. C. Breman, M. Virgilio and M. De Meyer (2010): Recovering full DNA barcodes from natural history collections of Tephritid fruitflies (Tephritidae, Diptera) using mini barcodes. Molecular Ecology Resources, 10: 459-465. 

  42. 0030-9923 Pakistan Journal of Zoology Wang Q. 44 421 2012 Wang, Q. and Wang, X. (2012): Comparison of methods for DNA extraction from a single chironomid for PCR analysis. Pakistan Journal of Zoology, 44: 421-426. 

  43. 1755-098X Molecular Ecology Resources Wong W. H. 14 1271 2014 10.1111/1755-0998.12275 Wong, W. H., Y. C. Tay, J. Puniamoorthy, M. Balke, P. S. Cranston and R. Meier (2014): ‘Direct PCR’ optimization yields a rapid, cost-effective, nondestructive and efficient method for obtaining DNA barcodes without DNA extraction. Molecular Ecology Resources, 14: 1271-1280. 

섹션별 컨텐츠 바로가기

AI-Helper ※ AI-Helper는 오픈소스 모델을 사용합니다.

AI-Helper 아이콘
AI-Helper
안녕하세요, AI-Helper입니다. 좌측 "선택된 텍스트"에서 텍스트를 선택하여 요약, 번역, 용어설명을 실행하세요.
※ AI-Helper는 부적절한 답변을 할 수 있습니다.

선택된 텍스트

맨위로