최소 단어 이상 선택하여야 합니다.
최대 10 단어까지만 선택 가능합니다.
다음과 같은 기능을 한번의 로그인으로 사용 할 수 있습니다.
NTIS 바로가기생명과학회지 = Journal of life science, v.25 no.3 = no.179, 2015년, pp.357 - 367
With the ongoing development of next-generation sequencing (NGS) platforms and advancements in the latest bioinformatics tools at an unprecedented pace, the ultimate goal of sequencing the human genome for less than $1,000 can be feasible in the near future. The rapid technological advances in NGS h...
* AI 자동 식별 결과로 적합하지 않은 문장이 있을 수 있으니, 이용에 유의하시기 바랍니다.
Adessi, C., Matton, G., Ayala, G., Turcatti, G., Mermod, J. J., Mayer, P. and Kawashima, E. 2000. Solid phase DNA amplification: characterisation of primer attachment and amplification mechanisms. Nucleic Acids Res. 28, e87.
Alkan, C., Coe, B. P. and Eichler, E. E. 2011. Genome structural variation discovery and genotyping. Nat. Rev. Genet. 12, 363-376.
Bao, H., Guo, H., Wang, J., Zhou, R., Lu, X. and Shi, S. 2009. MapView: visualization of short reads alignment on a desktop computer. Bioinformatics 12, 1554-1555.
Campbell, P. J., Stephens, P. J., Pleasance, E. D., O'Meara, S., Li, H., Santarius, T., Stebbings, L. A., Leroy, C. and Edkins, S. et al. 2008. Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. Nat. Genet. 40, 722-729.
Chiang, D. Y., Getz, G., Jaffe, D. B., O'Kelly, M. J. T., Zhao, X., Carter, S. L., Russ, C., Nusbaum, C., Meyerson, M. and Lander, E. S. 2009. High-resolution mapping of copy-number alterations with massively parallel sequencing. Nat. Methods 6, 99-103.
Dalca, A. V. and Brudno, M. 2010. Genome variation discovery with high-throughput sequencing data. Brief. Bioinform. 11, 3-14.
Dalloul, R. A., Long, J. A., Zimin, A. V., Aslam, L. and Beal, K. et al. 2010. Multi-platform next generation sequencing of the domestic turkey (Meleagris gallopavo): Genome assembly and analysis. PLoS Biol. 8, e1000475. doi:10.1371/journal.pbio.1000475.
Dinsdale, E. A., Edwards, R. A., Hall, D., Angly, F., Breitbart, M., Brulc, J. M., Furlan, M., Desnues, C., Haynes, M. and Li, L. et al. 2008. Functional metagenomic profiling of nine biomes. Nature 452, 629-632.
Durbin, R. M., Abecasis, G. R., Altshuler, D. L., Auton, A. and Brooks, L. D. et al. 2010. A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073.
Fedurco, M., Romieu, A., Williams, S., Lawrence, I. and Turcatti, G. 2006. BTA, a novel reagent for DNA attachment on glass and efficient generation of solid-phase amplified DNA colonies. Nucleic Acids Res. 34, e22.
Feuk, L., Carson, A. R. and Scherer, S. W. 2006. Structural variation in the human genome. Nature Rev. Genet. 7, 85-97.
Flicek, P. and Birney, E. 2009. Sense from sequence reads: methods for alignment and assembly. Nat. Methods 6, S6-S12.
Giardine, B., Riemer, C., Hardison, R. C., Burhans, R., Elnitski, L., Shah, P., Zhang, Y., Blankenberg, D., Albert, I. and Taylor, J. et al. 2005. Galaxy: a platform for interactive large-scale genome analysis. Genome Res. 15, 1451-1455.
Gogol-Doring, A. and Chen, W. 2012. An overview of the analysis of next generation sequencing data. Methods Mol. Biol. 802, 249-57.
Grada, A. and Weinbrecht, K. 2013. Next-generation sequencing: methodology and appliction. J. Investig. Dermatol. 133, e11; doi:10.1038/jid.2013.248.
Hoberman, R., Dias, J., Ge, B., Harmsen, E., Mayhew, M., Verlaan, D. J., Kwan, T., Dewar, K., Blanchette, M. and Pastinen, T. 2009. A probabilistic approach for SNP discovery in high-throughput human resequencing data. Genome Res. 19, 1542-1552.
Huang, W. and Marth, G. 2008. EagleView: a genome assembly viewer for next-generation sequencing technologies. Genome Res. 9, 1538-1543.
Hyman, E. D. 1988. A new method of sequencing DNA. Anal. Biochem. 174, 423-436.
Jimenez-Lopex, J. C., Gachomo, E. W., Sharma, S. and Kotchoni, S. O. 2013. Genome sequencing and next-generation sequence data analysis: a comprehensive compilation of bioinformatics tools and databases. Am. J. Mol. Biol. 3, 115-130.
Kent, W. J. 2002. BLAT-the BLAST-like alignment tool. Genome Res. 4, 656-664.
Kosakovsky, P. S., Wadhawan, S., Chiaromonte, F., Ananda, G., Chung, W. Y., Taylor, J. and Nekrutenko, A. 2009. Windshield splatter analysis with the Galaxy metagenomic pipeline. Genome Res. 19, 2144-2153.
Krawitz, P., Rödelsperger, C., Jäger, M., Jostins, L., Bauer, S. and Robinson, P. N. 2010. Microindel detection in short-read sequence data. Bioinformatics 26, 722-729. doi: 10.1093/bioinformatics/btq027.
Langmead, B., Trapnell, C., Pop, M. and Salzberg, S. L. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 3, R25.
Lassmann, T., Hayashizaki, Y. and Daub, C. O. 2011. SAMStat: Monitoring biases in next generation sequencing data. Bioinformatics 27, 130-131. doi:10.1093/bioinformatics/btq614.
Li, H. and Durbin, R. 2010. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 5, 589-595.
Li, H. and Durbin, R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 754-1760. doi:10.1093/bioinformatics/btp324.
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G. and Durbin, R. et al. 2009. The Sequence Alignment/Map format and SAMtools. Bioinformatics 16, 2078-2079.
Li, R., Li, Y., Kristiansen, K. and Wang, J. 2008. SOAP: short oligonucleotide alignment program. Bioinformatics 5, 713- 714.
Li, H., Ruan, J. and Durbin, R. 2008. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 11, 1851-1858.
Li, R., Yu, C., Li, Y., Lam, T., Yiu, S., Kristiansen, K. and Wang, J. 2009. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 15, 1966-1967.
Lorenzi, H. A., Hoover, J., Inman, J., Safford, T., Murphy, S., Kagan, L. and Williamson, S. J. 2011. The Viral Meta- Genome Annotation Pipeline (VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data. Stand. Genomic Sci. 4, 418-429.
Magi, A., Benlli, M., Gozzini, A., Girolami, F., Torricelli, F. and Brandi, M. L. 2010. Bioinformatics for next generation sequencing data. Genes 1, 294-307.
Magi, A., Benelli, M., Seungtai Yoon, S. and Torricelli, F. Detecting common copy number variants in high-throughput sequencing data by using Joint SLM algorithm. Nucleic Acids Res., submitted for publication.
Malhis, N. and Jones, S. J. M. 2010. High quality SNP calling using Illumina data at shallow coverage. Bioinformatics 26, 1029-1035.
Marth, G. T., Korf, I., Yandell, M. D., Yeh, R. T., Gu, Z., Zakeri, H., Stitziel, N. O., Hillier, L., Kwok, P. Y. and Gish W. R. 1999. A general approach to single-nucleotide polymorphism discovery. Nat. Genet. 23, 452-456.
McKenna, A., Hanna, M., Banks, E., Sivachenko, A. and Cibulskis, K., et al. 2010. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research 20, 1297-1303.
Milne, I., Bayer, M., Cardle, L., Shaw, P., Stephen, G., Wright, F. and Marshall, D. 2010. Tablet-next generation sequence assembly visualization. Bioinformatics 3, 401-402.
Mitra, R. D. and Church, G. M. 1999. In situ localized amplification and contact replication of many individual DNA molecules. Nucleic Acids Res. 27, e34.
Nagalakshmi, U., Wang, Z., Waern, K., Shou, C., Raha, D., Gerstein, M. and Snyder, M. 2008. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320, 1344-1349.
Ning, Z., Cox, A. J. and Mullikin, J. C. 2001. SSAHA: a fast search method for large DNA databases. Genome Res. 11, 1725-1729.
Nothnagel, M., Herrmann, A., Wolf, A., Schreiber, S., Platzer, M., Siebert, R., Krawczak, M. and Hampe, J. 2011. Technology-specific error signatures in the 1000 Genomes Project data. Human Genome 130, 505-516. doi:10.1007/s00439-011-0971-3.
Olshen, A. B., Venkatraman, E. S., Lucito, R. and Wigler, M. 2005. Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics 5, 557-572.
Pareek, C. S., Smoczynski, R. and Tretyn, A. 2011. Sequencing technologies and genome sequencing. J. Appl. Genetics 52, 413-435.
Park, P. J. 2009. ChIP-seq: advantages and challenges of a maturing technology. Nat. Rev. Genet. 10, 669-680.
Schadt, E. E., Turner, S. and Kasarskis, A. 2010. A window into third generation sequencing. Hum. Mol. Genet. 19, R227- R240.
Scholz, M. B., Lo, C. and Chain, P. 2012. Next generation sequencing and bioinformatics bottlenecks: the current state of metagenomics data analysis. Curr. Opin. Biotechnol. 23, 9-15.
Shendure, J., Porreca, G. J., Reppas, N. B., Lin, X., Mc-Cutcheon, J. P., Rosenbaum, A. M., Wang, M. D., Zhang, K., Mitra, R. D. and Church, G. M. 2005. Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309, 1728-1732.
Tawfik, D. S and Griffiths, A. D. 1998. Man-made cell-like compartments for molecular evolution. Nature Biotech. 16, 652-656.
Turcatti, G., Romieu, A., Fedurco, M. and Tairi, A. P. 2008. A new class of cleavable fluorescent nucleotides: synthesis and optimization as reversible terminators for DNA sequencing by synthesis. Nucleic Acids Res. 36, e25.
Whiteford, N., Skelly, T., Curtis, C., Ritchie, M. E., Löhr, A., Zaranek, A. W., Abnizova, I. and Brown, C. 2009. Swift: primary data analysis for the Illumina Solexa sequencing platform. Bioinformatics 25, 2194-2199.
Xie, W., Wang, F., Guo, L., Chen, Z., Sievert, S. M., Meng, J., Huang, G., Li, Y., Yan, Q. and Wu, S. et al. 2011. Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries. ISME J. 5, 414-426.
※ AI-Helper는 부적절한 답변을 할 수 있습니다.