최소 단어 이상 선택하여야 합니다.
최대 10 단어까지만 선택 가능합니다.
다음과 같은 기능을 한번의 로그인으로 사용 할 수 있습니다.
NTIS 바로가기Cell stem cell, v.27 no.6, 2020년, pp.905 - 919.e10
Youk, Jeonghwan (Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology) , Kim, Taewoo (Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology) , Evans, Kelly V. (Wellcome-MRC Cambridge Stem Cell Institute, Jeffrey Cheah Biomedical Centre, University of Cambridge) , Jeong, Young-Il (Division of Viral Disease Research, Center for Infectious Diseases Research, Korea National Institute of Health, Korea Centers for Disease Control and Prevention) , Hur, Yongsuk (BioMedical Research Center, Korea Advanced institute of Science and Technology) , Hong, Seon Pyo (Center for Vascular Research, Institute for Basic Science) , Kim, Je Hyoung (Division of Viral Disease Research, Center for Infectious Diseases Research, Korea National Institute of Health, Korea Centers for Disease Control and Prevention Repu) , Yi, Kijong , Kim, Su Yeon , Na, Kwon Joong , Bleazard, Thomas , Kim, Ho Min , Fellows, Mick , Mahbubani, Krishnaa T. , Saeb-Parsy, Kourosh , Kim, Seon Young , Kim, Young Tae , Koh, Gou Young , Choi, Byeong-Sun , Ju, Young Seok , Lee, Joo-Hyeon
Summary Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which is the cause of a present pandemic, infects human lung alveolar type 2 (hAT2) cells. Characterizing pathogenesis is crucial for developing vaccines and therapeutics. However, the lack of models mirroring the cellular physio...
Adams T.S. Schupp J.C. Poli S. Ayaub E.A. Neumark N. Ahangari F. Chu S.G. Raby B.A. DeIuliis G. Januszyk M. Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis Sci. Adv. 6 2020 eaba1983 32832599
Andersen K.G. Rambaut A. Lipkin W.I. Holmes E.C. Garry R.F. The proximal origin of SARS-CoV-2 Nat. Med. 26 2020 450 452 32284615
Arbour N. Cote G. Lachance C. Tardieu M. Cashman N.R. Talbot P.J. Acute and persistent infection of human neural cell lines by human coronavirus OC43 J.?Virol. 73 1999 3338 3350 10074188
Bao L. Deng W. Huang B. Gao H. Liu J. Ren L. Wei Q. Yu P. Xu Y. Qi F. The pathogenicity of SARS-CoV-2 in hACE2 transgenic mice Nature 583 2020 830 833 32380511
Bar-On Y.M. Flamholz A. Phillips R. Milo R. SARS-CoV-2 (COVID-19) by the numbers eLife 9 2020 e57309 32228860
Barkauskas C.E. Cronce M.J. Rackley C.R. Bowie E.J. Keene D.R. Stripp B.R. Randell S.H. Noble P.W. Hogan B.L.M. Type 2 alveolar cells are stem cells in adult lung J.?Clin. Invest. 123 2013 3025 3036 23921127
Bartfeld S. Bayram T. van de Wetering M. Huch M. Begthel H. Kujala P. Vries R. Peters P.J. Clevers H. In?vitro expansion of human gastric epithelial stem cells and their responses to bacterial infection Gastroenterology 148 2015 126 136 e126 25307862
Blanco-Melo D. Nilsson-Payant B.E. Liu W.C. Uhl S. Hoagland D. Moller R. Jordan T.X. Oishi K. Panis M. Sachs D. Imbalanced host response to SARS-CoV-2 drives development of COVID-19 Cell 181 2020 1036 1045 e1039 32416070
Blighe K. Rana S. Lewis M. EnhancedVolcano: publication-ready volcano plots with enhanced colouring and labeling 2018 https://github.com/kevinblighe/EnhancedVolcano
Chu H. Chan J.F.-W. Yuen T.T.-T. Shuai H. Yuan S. Wang Y. Hu B. Yip C.C.-Y. Tsang J.O.-L. Huang X. Comparative tropism, replication kinetics, and cell damage profiling of SARS-CoV-2 and SARS-CoV with implications for clinical manifestations, transmissibility, and laboratory studies of COVID-19: an observational study Lancet Microbe 1 2020 e14 e23 32835326
Dobbs L.G. Isolation and culture of alveolar type II cells Am. J. Physiol. 258 1990 L134 L147 2185652
Dobin A. Davis C.A. Schlesinger F. Drenkow J. Zaleski C. Jha S. Batut P. Chaisson M. Gingeras T.R. STAR: ultrafast universal RNA-seq aligner Bioinformatics 29 2013 15 21 23104886
El-Hashash A.H. Warburton D. Cell polarity and spindle orientation in the distal epithelium of embryonic lung Dev. Dyn. 240 2011 441 445 21246661
Elbadawi M. Efferth T. Organoids of human airways to study infectivity and cytopathy of SARS-CoV-2 Lancet Respir. Med. 8 2020 E55 E56 32446313
Fatehullah A. Tan S.H. Barker N. Organoids as an in?vitro model of human development and disease Nat. Cell Biol. 18 2016 246 254 26911908
Forero A. Ozarkar S. Li H. Lee C.H. Hemann E.A. Nadjsombati M.S. Hendricks M.R. So L. Green R. Roy C.N. Differential activation of the transcription factor IRF1 underlies the distinct immune responses elicited by type i and type III interferons Immunity 51 2019 451 464.e456 31471108
Forster P. Forster L. Renfrew C. Forster M. Phylogenetic network analysis of SARS-CoV-2 genomes Proc. Natl. Acad. Sci. USA 117 2020 9241 9243 32269081
Frank D.B. Peng T. Zepp J.A. Snitow M. Vincent T.L. Penkala I.J. Cui Z. Herriges M.J. Morley M.P. Zhou S. Emergence of a wave of Wnt signaling that regulates lung alveologenesis by controlling epithelial self-renewal and differentiation Cell Rep. 17 2016 2312 2325 27880906
Fujii M. Matano M. Toshimitsu K. Takano A. Mikami Y. Nishikori S. Sugimoto S. Sato T. Human intestinal organoids maintain self-renewal capacity and cellular diversity in niche-inspired culture condition Cell Stem Cell 23 2018 787 793.e786 30526881
Gonzalez R.F. Allen L. Gonzales L. Ballard P.L. Dobbs L.G. HTII-280, a biomarker specific to the apical plasma membrane of human lung alveolar type II cells J.?Histochem. Cytochem. 58 2010 891 901 20566753
Gu Z. Eils R. Schlesner M. Complex heatmaps reveal patterns and correlations in multidimensional genomic data Bioinformatics 32 2016 2847 2849 27207943
Habermann A.C. Gutierrez A.J. Bui L.T. Yahn S.L. Winters N.I. Calvi C.L. Peter L. Chung M.-I. Taylor C.J. Jetter C. Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis Sci. Adv. 6 2020 eaba1972 32832598
Hamming I. Timens W. Bulthuis M.L. Lely A.T. Navis G. van Goor H. Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis J.?Pathol. 203 2004 631 637 15141377
Heo I. Dutta D. Schaefer D.A. Iakobachvili N. Artegiani B. Sachs N. Boonekamp K.E. Bowden G. Hendrickx A.P.A. Willems R.J.L. Modelling Cryptosporidium infection in human small intestinal and lung organoids Nat. Microbiol. 3 2018 814 823 29946163
Hoffmann M. Kleine-Weber H. Schroeder S. Kruger N. Herrler T. Erichsen S. Schiergens T.S. Herrler G. Wu N.H. Nitsche A. SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor Cell 181 2020 271 280.e278 32142651
Huang J. Hume A.J. Abo K.M. Werder R.B. Villacorta-Martin C. Alysandratos K.D. Beermann M.L. Simone-Roach C. Lindstrom-Vautrin J. Olejnik J. SARS-CoV-2 infection of pluripotent stem cell-derived human lung alveolar type 2 cells elicits a rapid epithelial-intrinsic inflammatory response Cell Stem Cell 2020 10.1101/2020.06.30.175695 Published online September 18, 2020
Iwasaki A. Foxman E.F. Molony R.D. Early local immune defences in the respiratory tract Nat. Rev. Immunol. 17 2017 7 20 27890913
Jacob F. Pather S.R. Huang W.K. Zhang F. Wong S.Z.H. Zhou H. Cubitt B. Fan W. Chen C.Z. Xu M. Human pluripotent stem cell-derived neural cells and brain organoids reveal SARS-CoV-2 neurotropism predominates in choroid plexus epithelium Cell Stem Cell 2020 10.1016/j.stem.2020.09.016 Published online September 21, 2020
Jensen-Taubman S.M. Steinberg S.M. Linnoila R.I. Bronchiolization of the alveoli in lung cancer: pathology, patterns of differentiation and oncogene expression Int. J. Cancer 75 1998 489 496 9466646
Kim D. Lee J.Y. Yang J.S. Kim J.W. Kim V.N. Chang H. The architecture of SARS-CoV-2 transcriptome Cell 181 2020 914 921.e910 32330414
Kim J.M. Chung Y.S. Jo H.J. Lee N.J. Kim M.S. Woo S.H. Park S. Kim J.W. Kim H.M. Han M.G. Identification of coronavirus isolated from a patient in Korea with COVID-19 Osong Public Health Res. Perspect. 11 2020 3 7 32149036
Kim Y.I. Kim S.G. Kim S.M. Kim E.H. Park S.J. Yu K.M. Chang J.H. Kim E.J. Lee S. Casel M.A.B. Infection and rapid transmission of SARS-CoV-2 in ferrets Cell Host Microbe 27 2020 704 709.e702 32259477
Kiselev V.Y. Andrews T.S. Hemberg M. Challenges in unsupervised clustering of single-cell RNA-seq data Nat. Rev. Genet. 20 2019 273 282 30617341
Knoops K. Kikkert M. van den Worm S.H. Zevenhoven-Dobbe J.C. van der Meer Y. Koster A.J. Mommaas A.M. Snijder E.J. SARS-coronavirus replication is supported by a reticulovesicular network of modified endoplasmic reticulum PLoS Biol. 6 2008 e226 18798692
Koboldt D.C. Zhang Q. Larson D.E. Shen D. McLellan M.D. Lin L. Miller C.A. Mardis E.R. Ding L. Wilson R.K. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing Genome Res. 22 2012 568 576 22300766
Kuleshov M.V. Jones M.R. Rouillard A.D. Fernandez N.F. Duan Q. Wang Z. Koplev S. Jenkins S.L. Jagodnik K.M. Lachmann A. Enrichr: a comprehensive gene set enrichment analysis web server 2016 update Nucleic Acids Res. 44 W1 2016 W90-7 27141961
Lamers M.M. Beumer J. van der Vaart J. Knoops K. Puschhof J. Breugem T.I. Ravelli R.B.G. Paul van Schayck J. Mykytyn A.Z. Duimel H.Q. SARS-CoV-2 productively infects human gut enterocytes Science 369 2020 50 54 32358202
Lauer S.A. Grantz K.H. Bi Q. Jones F.K. Zheng Q. Meredith H.R. Azman A.S. Reich N.G. Lessler J. The incubation period of coronavirus disease 2019 (COVID-19) from publicly reported confirmed cases: estimation and application Ann. Intern. Med. 172 2020 577 582 32150748
Lee J.H. Bhang D.H. Beede A. Huang T.L. Stripp B.R. Bloch K.D. Wagers A.J. Tseng Y.H. Ryeom S. Kim C.F. Lung stem cell differentiation in mice directed by endothelial cells via a BMP4-NFATc1-thrombospondin-1 axis Cell 156 2014 440 455 24485453
Li B. Dewey C.N. RSEM: accurate transcript quantification from RNA-seq data with or without a reference genome BMC Bioinformatics 12 2011 323 21816040
Li H. Handsaker B. Wysoker A. Fennell T. Ruan J. Homer N. Marth G. Abecasis G. Durbin R. 1000 Genome Project Data Processing Subgroup The Sequence Alignment/Map format and SAMtools Bioinformatics 25 2009 2078 2079 19505943
Love M.I. Huber W. Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Genome Biol. 15 2014 550 25516281
Maier H.J. Hawes P.C. Cottam E.M. Mantell J. Verkade P. Monaghan P. Wileman T. Britton P. Infectious bronchitis virus generates spherules from zippered endoplasmic reticulum membranes MBio 4 2013 e00801 e00813 24149513
Monel B. Compton A.A. Bruel T. Amraoui S. Burlaud-Gaillard J. Roy N. Guivel-Benhassine F. Porrot F. Genin P. Meertens L. Zika virus induces massive cytoplasmic vacuolization and paraptosis-like death in infected cells EMBO J. 36 2017 1653 1668 28473450
Monteil V. Kwon H. Prado P. Hagelkruys A. Wimmer R.A. Stahl M. Leopoldi A. Garreta E. Hurtado Del Pozo C. Prosper F. Inhibition of SARS-CoV-2 infections in engineered human tissues using clinical-grade soluble human ACE2 Cell 181 2020 905 913.e907 32333836
Muus C. Luecken M.D. Eraslan G. Waghray A. Heimberg G. Sikkema L. Kobayashi Y. Vaishnav E.D. Subramanian A. Smilie C. Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells bioRxiv 2020 10.1101/2020.04.19.049254
Nabhan A.N. Brownfield D.G. Harbury P.B. Krasnow M.A. Desai T.J. Single-cell Wnt signaling niches maintain stemness of alveolar type 2 cells Science 359 2018 1118 1123 29420258
Nikoli M.Z. Caritg O. Jeng Q. Johnson J.A. Sun D. Howell K.J. Brady J.L. Laresgoiti U. Allen G. Butler R. Human embryonic lung epithelial tips are multipotent progenitors that can be expanded in?vitro as long-term self-renewing organoids eLife 6 2017 e26575 28665271
Park A. Iwasaki A. Type I and type III interferons: induction, signaling, evasion, and application to combat COVID-19 Cell Host Microbe 27 2020 870 878 32464097
Pfaffl M.W. A new mathematical model for relative quantification in real-time RT-PCR Nucleic Acids Res. 29 2001 e45 11328886
Pocha S.M. Knust E. Complexities of Crumbs function and regulation in tissue morphogenesis Curr. Biol. 23 2013 R289 R293 23578880
Ramani A. Muller L. Ostermann P.N. Gabriel E. Abida-Islam P. Muller-Schiffmann A. Mariappan A. Goureau O. Gruell H. Walker A. SARS-CoV-2 targets neurons of 3D human brain organoids EMBO J. 39 2020 e106230 32876341
Ren X. Glende J. Al-Falah M. de Vries V. Schwegmann-Wessels C. Qu X. Tan L. Tschernig T. Deng H. Naim H.Y. Herrler G. Analysis of ACE2 in polarized epithelial cells: surface expression and function as receptor for severe acute respiratory syndrome-associated coronavirus J.?Gen. Virol. 87 2006 1691 1695 16690935
Robinson J.T. Thorvaldsdottir H. Winckler W. Guttman M. Lander E.S. Getz G. Mesirov J.P. Integrative genomics viewer Nat. Biotechnol. 29 2011 24 26 21221095
Rodriguez-Boulan E. Macara I.G. Organization and execution of the epithelial polarity programme Nat. Rev. Mol. Cell Biol. 15 2014 225 242 24651541
Sachs N. Papaspyropoulos A. Zomer-van Ommen D.D. Heo I. Bottinger L. Klay D. Weeber F. Huelsz-Prince G. Iakobachvili N. Amatngalim G.D. Long-term expanding human airway organoids for disease modeling EMBO J. 38 2019 38
Saunders C.T. Wong W.S. Swamy S. Becq J. Murray L.J. Cheetham R.K. Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs Bioinformatics 28 2012 1811 1817 22581179
Schneider W.M. Chevillotte M.D. Rice C.M. Interferon-stimulated genes: a complex web of host defenses Annu. Rev. Immunol. 32 2014 513 545 24555472
Shang J. Ye G. Shi K. Wan Y. Luo C. Aihara H. Geng Q. Auerbach A. Li F. Structural basis of receptor recognition by SARS-CoV-2 Nature 581 2020 221 224 32225175
Sia S.F. Yan L.M. Chin A.W.H. Fung K. Choy K.T. Wong A.Y.L. Kaewpreedee P. Perera R.A.P.M. Poon L.L.M. Nicholls J.M. Pathogenesis and transmission of SARS-CoV-2 in golden hamsters Nature 583 2020 834 838 32408338
Stuart T. Butler A. Hoffman P. Hafemeister C. Papalexi E. Mauck W.M. 3rd Hao Y. Stoeckius M. Smibert P. Satija R. Comprehensive integration of single-cell data Cell 177 2019 1888 1902.e1821 31178118
Szymaniak A.D. Mahoney J.E. Cardoso W.V. Varelas X. Crumbs3-Mediated Polarity Directs Airway Epithelial Cell Fate through the Hippo Pathway Effector Yap Dev. Cell 34 2015 283 296 26235047
Van der Velden J.L. Bertoncello I. McQualter J.L. LysoTracker is a marker of differentiated alveolar type II cells Respir. Res. 14 2013 123 24215602
Walls A.C. Park Y.J. Tortorici M.A. Wall A. McGuire A.T. Veesler D. Structure, function, and antigenicity of the SARS-CoV-2 spike glycoprotein Cell 181 2020 281 292.e286 32155444
Wang Q. Zhang Y. Wu L. Niu S. Song C. Zhang Z. Lu G. Qiao C. Hu Y. Yuen K.Y. Structural and functional basis of SARS-CoV-2 entry by using human ACE2 Cell 181 2020 894 904 e899 32275855
Wolfel R. Corman V.M. Guggemos W. Seilmaier M. Zange S. Muller M.A. Niemeyer D. Jones T.C. Vollmar P. Rothe C. Virological assessment of hospitalized patients with COVID-2019 Nature 581 2020 465 469 32235945
Wu F. Zhao S. Yu B. Chen Y.M. Wang W. Song Z.G. Hu Y. Tao Z.W. Tian J.H. Pei Y.Y. A new coronavirus associated with human respiratory disease in China Nature 579 2020 265 269 32015508
Xu Y. Mizuno T. Sridharan A. Du Y. Guo M. Tang J. Wikenheiser-Brokamp K.A. Perl A.T. Funari V.A. Gokey J.J. Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis JCI Insight 1 2016 e90558 27942595
Yang L. Han Y. Nilsson-Payant B.E. Gupta V. Wang P. Duan X. Tang X. Zhu J. Zhao Z. Jaffre F. A human pluripotent stem cell-based platform to study SARS-CoV-2 tropism and model virus infection in human cells and organoids Cell Stem Cell 27 2020 125 136.e127 32579880
Zacharias W.J. Frank D.B. Zepp J.A. Morley M.P. Alkhaleel F.A. Kong J. Zhou S. Cantu E. Morrisey E.E. Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor Nature 555 2018 251 255 29489752
Zhou L. Niu Z. Jiang X. Zhang Z. Zheng Y. Wang Z. Zhu Y. Gao L. Wang X. Sun Q. Systemic analysis of tissue cells potentially vulnerable to SARS-CoV-2 infection by the protein-proofed single-cell RNA profiling of ACE2, TMPRSS2 and Furin proteases bioRxiv 2020
Ziegler C.G.K. Allon S.J. Nyquist S.K. Mbano I.M. Miao V.N. Tzouanas C.N. Cao Y. Yousif A.S. Bals J. Hauser B.M. SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues Cell 181 2020 1016 1035.e1019 32413319
해당 논문의 주제분야에서 활용도가 높은 상위 5개 콘텐츠를 보여줍니다.
더보기 버튼을 클릭하시면 더 많은 관련자료를 살펴볼 수 있습니다.
*원문 PDF 파일 및 링크정보가 존재하지 않을 경우 KISTI DDS 시스템에서 제공하는 원문복사서비스를 사용할 수 있습니다.
저자가 APC(Article Processing Charge)를 지불한 논문에 한하여 자유로운 이용이 가능한, hybrid 저널에 출판된 논문
※ AI-Helper는 부적절한 답변을 할 수 있습니다.