[논문]Transcriptome analysis of Pseudostellaria heterophylla in response to the infection of pathogenic Fusarium oxysporum

Qin, Xianjin; Wu, Hongmiao; Chen, Jun; Wu, Linkun; Lin, Sheng; Khan, Muhammad Umar; Boorboori, Mohammad Reza; Lin, Wenxiong

doi:10.1186/s12870-017-1106-3

[해외논문] Transcriptome analysis of Pseudostellaria heterophylla in response to the infection of pathogenic Fusarium oxysporum 원문보기

BMC plant biology, v.17 suppl.1, 2017년, pp.155 -

Qin, Xianjin (Key Laboratory for Genetics, Breeding and Multiple Utilization of Crops, Ministry of Education) , Wu, Hongmiao (Key Laboratory of Crop Ecology and Molecular Physiology (Fujian Agriculture and Forestry University), Fujian Province University, Fuzhou, 350002 People’s Republic of China) , Chen, Jun (Key Laboratory of Crop Ecology and Molecular Physiology (Fujian Agriculture and Forestry University), Fujian Province University, Fuzhou, 350002 People’s Republic of China) , Wu, Linkun (Key Laboratory of Crop Ecology and Molecular Physiology (Fujian Agriculture and Forestry University), Fujian Province University, Fuzhou, 350002 People’s Republic of China) , Lin, Sheng (Key Laboratory of Crop Ecology and Molecular Physiology (Fujian Agriculture and Forestry University), Fujian Province University, Fuzhou, 350002 People’s Republic of China) , Khan, Muhammad Umar (Key Laboratory of Crop Ecology and Molecular Physiology (Fujian Agriculture and Forest) , Boorboori, Mohammad Reza , Lin, Wenxiong

Abstract ▼ AI-Helper

BackgroundPseudostellaria heterophylla (P. heterophylla), a herbaceous perennial, belongs to Caryophyllaceae family and is one of the Chinese herbal medicine with high pharmacodynamic value. It can be used to treat the spleen deficiency, anorexia, weakness after illness and spontaneous perspiration symptoms. Our previous study found that consecutive monoculture of Pseudostellaria heterophylla could lead to the deterioration of the rhizosphere microenvironment. The specialized forms of pathogenic fungus Fusarium oxysporum f.Sp. heterophylla (F. oxysporum) in rhizosphere soils of P. heterophylla plays an important role in the consecutive monoculture of P. heterophylla.ResultsIn this study, F. oxysporum was used to infect the tissue culture plantlets of P. heterophylla to study the responding process at three different infection stages by using RNA-sequencing. We obtained 127,725 transcripts and 47,655 distinct unigenes by de novo assembly and obtained annotated information in details for 25,882 unigenes. The Kyoto Encyclopedia of Genes and Genomes pathway analysis and the real-time quantitative PCR results suggest that the calcium signal system and WRKY transcription factor in the plant-pathogen interaction pathway may play an important role in the response process, and all of the WRKY transcription factor genes were divided into three different types. Moreover, we also found that the stimulation of F. oxysporum may result in the accumulation of some phenolics in the plantlets and the programmed cell death of the plantlets.ConclusionsThis study has partly revealed the possible molecular mechanism of the population explosion of F. oxysporum in rhizosphere soils and signal response process, which can be helpful in unraveling the role of F. oxysporum in consecutive monoculture problems of P. heterophylla.Electronic supplementary materialThe online version of this article (10.1186/s12870-017-1106-3) contains supplementary material, which is available to authorized users.

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