[논문]Genome-wide identification of NBS-encoding resistance genes in Brassica rapa

Mun, Jeong-Hwan; Yu, Hee-Ju; Park, Soomin; Park, Beom-Seok

doi:10.1007/s00438-009-0492-0

[해외논문] Genome-wide identification of NBS-encoding resistance genes in Brassica rapa 원문보기

Molecular genetics and genomics : MGG, v.282 no.6, 2009년, pp.617 - 631

Mun, Jeong-Hwan (Genomics Division, Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration, 150 Suin-ro, Gwonseon-gu, Suwon, 441-707 Korea) , Yu, Hee-Ju (Vegetable Research Division, National Institute of Horticultural and Herbal Science, Rural Development Administration, Tap-dong 540-41, Gwonseon-gu, Suwon, 441-440 Korea) , Park, Soomin (Vegetable Research Division, National Institute of Horticultural and Herbal Science, Rural Development Administration, Tap-dong 540-41, Gwonseon-gu, Suwon, 441-440 Korea) , Park, Beom-Seok (Genomics Division, Department of Agricultural Biotechnology, National Academy of Agricultural Science, Rural Development Administration, 150 Suin-ro, Gwonseon-gu, Suwon, 441-707 Korea)

Abstract ▼ AI-Helper

Nucleotide-binding site (NBS)-encoding resistance genes are key plant disease-resistance genes and are abundant in plant genomes, comprising up to 2% of all genes. The availability of genome sequences from several plant models enables the identification and cloning of NBS-encoding genes from closely related species based on a comparative genomics approach. In this study, we used the genome sequence of Brassica rapa to identify NBS-encoding genes in the Brassica genome. We identified 92 non-redundant NBS-encoding genes [30 CC-NBS-LRR (CNL) and 62 TIR-NBS-LRR (TNL) genes] in approximately 100 Mbp of B. rapa euchromatic genome sequence. Despite the fact that B. rapa has a significantly larger genome than Arabidopsis thaliana due to a recent whole genome triplication event after speciation, B. rapa contains relatively small number of NBS-encoding genes compared to A. thaliana, presumably because of deletion of redundant genes related to genome diploidization. Phylogenetic and evolutionary analyses suggest that relatively higher relaxation of selective constraints on the TNL group after the old duplication event resulted in greater accumulation of TNLs than CNLs in both Arabidopsis and Brassica genomes. Recent tandem duplication and ectopic deletion are likely to have played a role in the generation of novel Brassica lineage-specific resistance genes.Electronic supplementary materialThe online version of this article (doi:10.1007/s00438-009-0492-0) contains supplementary material, which is available to authorized users.

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[해외논문] Genome-wide identification of NBS-encoding resistance genes in Brassica rapa 원문보기

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[해외논문] Genome-wide identification of NBS-encoding resistance genes in Brassica rapa 원문보기

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