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[해외논문] Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes 원문보기

BMC genomics, v.17, 2016년, pp.212 -   

Tsai, Chi-Chu (Crop Improvement Division, Kaohsiung District Agricultural Improvement Station, Pingtung, 900 Taiwan) ,  Wu, Keh-Ming (Welgene Biotech. Co., Ltd., Taipei, 115 Taiwan) ,  Chiang, Tzen-Yuh (Department of Life Science, Cheng-Kung University, Tainan, 701 Taiwan) ,  Huang, Chun-Yen (Crop Improvement Division, Kaohsiung District Agricultural Improvement Station, Pingtung, 900 Taiwan) ,  Chou, Chang-Hung (Research Center for Biodiversity, China Medical University, Taichung, 404 Taiwan) ,  Li, Shu-Ju (Crop Improvement Division, Kaohsiung District Agricultural Improvement Station, Pingtung, 900 Taiwan) ,  Chiang, Yu-Chung (Department of Biological Sciences, National Sun Yat-sen University, Kaohsiung, 804 Taiwan)

Abstract AI-Helper 아이콘AI-Helper

BackgroundGastrodia elata Blume (Orchidaceae) is an important Chinese medicine with several functional components. In the life cycle of G. elata, the orchid develops a symbiotic relationship with two compatible mycorrhizal fungi Mycena spp. and Armillaria mellea during seed germination to form veget...

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참고문헌 (112)

  1. 1. Zhang W Li B The biological relationship of Gastrodia elata and Armillaria mellea Acta Bot Sin 1980 22 57 62 

  2. 2. Huang H Liang Z Wang W Review of nutrient source studies on Gastrodia elata Bl growth up J Northwest Sci Tech Univ Agric For 2004 32 145 53 

  3. 3. Park E Lee W Ahn J In vitro propagation of myco-heterotrophic Gastrodia elata Hortic Environ Biotech 2012 53 415 20 10.1007/s13580-012-0046-y 

  4. 4. Liu H Luo Y Liu H Studies of mycorrhizal fungi of Chinese orchids and their role in orchid conservation in China-A review Bot Rev 2010 76 241 62 10.1007/s12229-010-9045-9 

  5. 5. Park E Lee W In vitro symbiotic germination of myco-heterotrophic Gastrodia elata by Mycena species Plant Biotech Rep 2013 7 185 91 10.1007/s11816-012-0248-x 

  6. 6. Xu J Gao S Retrospect on the research of the cultivation of Gastrodia elata Bl, a rare traditional Chinese medicine Chinese Med J 2000 113 686 92 

  7. 7. Xu J Ran Y Mou C Wang C Cao J Wang M A brief report on the nutritious sources of seed germination of Gastrodia elata Bull Chin Mat Med 1981 6 2 

  8. 8. Xu J Ran Y Guo S Studies on the life cycle of Gastrodia elata Acta Acad Med Sin 1989 11 237 41 

  9. 9. Zhou J Yang Y Liang H Liu C Morphology of Gastrodia elata 1987 Peijin Science Publish Center 1 122 

  10. 10. Liu T Li CM Han YL Chiang TY Chiang YC Sung HM Highly diversified fungi are associated with the achlorophyllous orchid Gastrodia flavilabella BMC Genomics 2015 16 185 10.1186/s12864-015-1422-7 25886817 

  11. 11. Fan L Guo S Interaction between protocorms of Gastrodia elata (orchidaceae) and Mycena dendrobii in symbiotic germination Mycosystema 1999 18 219 25 

  12. 12. Fan L Guo S Xiao P Interaction between protocorms of Gastrodia elata (orchidaceae) and Mycena anoectochila during symbiotic germination Mycosystema 2001 20 539 46 

  13. 13. Fan L Guo S Cao W Xiao P Xu J Isolation, culture, identification and biological activity of Mycena orchidicola sp. nov. in Cymbidium sinense (orchidaceae) Acta Mycol Sin 1996 15 251 5 

  14. 14. Guo S Fan L Cao W Xu J Xiao P Mycena anoectochila sp. nov. isolated from mycorrhizal roots of Anoectochilus roxburghii from Xishuangbanna, China Mycologia 1997 89 952 4 10.2307/3761116 

  15. 15. Guo S Fan L Cao W Chen X Mycena dendrobii , a new mycorrhizal fungus Mycosystema 1999 18 141 4 

  16. 16. Xu J Guo X Fungus associated with nutrition of seed germination of Gastrodia elata-Mycena osmundicola Lange Acta Mycol Sin 1989 8 221 6 

  17. 17. Guo S Xu J Studies on the cell ultrastructure in the course of Gastrodia elata digesting Mycena osmundicola LANGE and Armillaria mellea FR Acta Mycol Sin 1990 9 218 25 

  18. 18. Kusano S Gastrodia elata and its symbiotic association with Armillaria mellea J Coll Agric Imp Univ Tokyo 1911 4 1 65 

  19. 19. Zou N Bai X Lu J Yang J Xu G Sun D Study on symbiotic mechanism between Gastrodia elata Blume and Armillaria mellea in tissue culture system Med Plant 2010 1 91 2 

  20. 20. Lan J Xu J Li J Studies on the infecting process of labelled Armillaria mellea to Gastrodia elata Acta Agric Nucleatae Sinica 1986 10 123 5 

  21. 21. Xu J The changes of cell structure in the courses of Armillaria mellea penetrating the nutritional stems of Gastrodia elata Acta Acad Med Sin 2001 23 150 3 

  22. 22. Xu J Fan L Cytodifferentiation of the seeds (protocorms) and vegetative propagation corms colonized by mycorrhizal fungi Acta Bot Sin 2001 43 1003 10 

  23. 23. Tang W Eisenbrand G Gastrodia elata B1. Chinese drugs of plant origin 1992 Berlin/Heidelberg Springer-Verlag 545 8 

  24. 24. Bensky D Gamble A Chinese herbal medicine: materia medica. Revised Edition 1993 Seattle Eastland Press 971 974 

  25. 25. Jung T Suh S Lee H Kim I Kim H Yoo H Protective effects of several components of Gastrodia elata on lipid peroxidation in gerbil brain homogenates Phytother Res 2007 21 960 4 10.1002/ptr.2193 17604371 

  26. 26. Kim D Kim J Han Y Alzheimer’s disease drug discovery from herbs: neuroprotectivity from β-Amyloid (1–42) insult J Altern Complement Med 2007 13 333 40 10.1089/acm.2006.6107 17480132 

  27. 27. Feng X Chen Y Yang J Studies on constituents of Tian-Ma. Gastrodia elata Bl Acta Chim Sin 1979 37 175 81 

  28. 28. Zhou J Yang Y Yang J Chemistry of Gastrodia elata Bl. I. Isolation and identification of chemical constituents of Gastrodia elata Bl Acta Chim Sin 1979 37 183 8 

  29. 29. Zhao Y Cao Q Xiang Y Hu Z Identification and determination of active components in Gastrodia elata Bl by capillary electrophoresis J Chromatogr 1999 849 277 83 10.1016/S0021-9673(99)00534-8 

  30. 30. Zhen J Study on actions of tuber (tian-ma) and vanillin on counteracting epilepsy Chin J Physiol 1961 24 187 

  31. 31. Huh K Kim J Kwon T The mechanism of anticonvulsive effect of the rhizoma of Gastrodia elata in pentylenetetrazole treated rats Yakhak Hoechi 1998 42 330 5 

  32. 32. Hsieh C Tang N Chiang S Hsieh C Lin J Anticonvulsive and free radical scavenging actions of two herbs, Uncaria rhynchophylla (MIQ) Jack and Gastrodia elata Bl., in kainic acid-treated rats Life Sci 1999 65 2071 82 10.1016/S0024-3205(99)00473-7 10579461 

  33. 33. Ha J Lee D Lee J Kim J Yong C Kim J 4-Hydroxybenzaldehyde from Gastrodia elata B1. is active in the antioxidation and GABAergic neuromodulation of the rat brain J Ethnopharmacol 2000 73 329 33 10.1016/S0378-8741(00)00313-5 11025174 

  34. 34. Hsieh C Chang C Chiang S Li T Tang N Pon C Anticonvulsive and free radical scavenging activities of vanillyl alcohol in ferric chlorideinduced epileptic seizures in Sprague-awley rats Life Sci 2000 67 1185 95 10.1016/S0024-3205(00)00706-2 10954052 

  35. 35. Ha JH Shin SM Lee SK Kim JS Shin US Huh K In vitro effects of hydroxybenzaldehydes from Gastrodia elata and their analogues on GABAergic neurotransmission, and a structure–activity correlation Planta Med 2001 67 877 80 10.1055/s-2001-18844 11745032 

  36. 36. Kim H Moon K Oh S Kim S Lee S Ether fraction of methanol extracts of Gastrodia elata , a traditional medicinal herb, protects against kainic acid-induced neuronal damage in the mouse hippocampus Neurosci Lett 2001 314 65 8 10.1016/S0304-3940(01)02296-0 11698148 

  37. 37. Taguchi H Yosioka I Yamasaki K Kim I Studies on the constituents of Gastrodia elata Blume Chem Pharm Bull 1981 29 55 62 10.1248/cpb.29.55 

  38. 38. Huang NK Chern Y Fang JM Lin CI Chen WP Lin YL Neuroprotective principles from Gastrodia elata J Nat Prod 2007 70 571 4 10.1021/np0605182 17381154 

  39. 39. Yang X Zhu J Yang R Liu J Li L Zhang H Phenolic constituents from the rhizomes of Gastrodia elata Nat Prod Res 2007 21 180 6 10.1080/14786410601081997 17365706 

  40. 40. Gong X Sucher N Stroke therapy in traditional medicine (TCM): prospects for drug discovery and development TiPS 1999 20 191 6 10354613 

  41. 41. Jin W Tian D Studies on chemisty and pharmacology of Gastrodia elata Chin Tradit Drug Tech 2000 2 21 3 

  42. 42. Yang S Lan J Xu J Progress of study on Gastrodia elata Chin Tradit Herb Drugs 2000 31 6 69 

  43. 43. Zhou J Yang Y Yang C Chemical study on gastrodin and related compounds, the synthese of gastrodin and related compounds Acta Chem Sin 1980 38 162 5 

  44. 44. Ye H Wang J Wang S Tan D Compare seed stem with commercial rhizoma Gastrodia in pharmacologic effect II Lishizhen Med Mat Med Res 2003 14 730 1 

  45. 45. Zhu H Dai P Zhang W Chen E Han W Chen C Enzymic synthesis of gastrodin through microbial transformation and purification of gastrodin biosynthesis enzyme Biol Pharm Bull 2010 33 1680 4 10.1248/bpb.33.1680 20930375 

  46. 46. Peng CX Gong JS Zhang XF Zhang M Zheng SQ Production of gastrodin through biotransformation of p -hydroxybenzyl alcohol using hairy root cultures of Datura tatula L Afr J Biotechnol 2008 7 211 6 

  47. 47. Zhang H He G Liu J Ruan H Chen Q Zhang Q Production of gastrodin through biotransformation of p-2-hydroxybenzyl alcohol by cultured cells of Armillaria luteovirens Sacc Enzyme Microb Technol 2008 43 25 30 10.1016/j.enzmictec.2008.03.007 

  48. 48. Sun C Li Y Wu Q Luo H Sun Y Song J De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis BMC Genomics 2010 11 262 10.1186/1471-2164-11-262 20416102 

  49. 49. Kouko J Conn E The metabolism of aromatic compounds in higher plants: IV. Purification and propertiles of the phenylalanine deaminase of Hordeum vulgare J Biol Chem 1961 236 2692 8 14458851 

  50. 50. Heiden A Kobel K Komenda M Koppmann R Shao M Wildt J Toluene emissions from plants Geophys Res Lett 1999 26 1283 6 10.1029/1999GL900220 

  51. 51. Singer A Crowley D Thompson I Secondary plant metabolites in phytoremediation and biotransformation TRENDS Biotech 2003 21 123 30 10.1016/S0167-7799(02)00041-0 

  52. 52. Rasi S Veijanen A Rintala J Trace compounds of biogas from different biogas production plants Energy 2007 32 1375 80 10.1016/j.energy.2006.10.018 

  53. 53. Zhang H. Research on production of gastrodin through biotransformation by Armillaria luteo-virens Sacc. Master’s thesis, Zhejiang University. 2010. 

  54. 54. Carmona M Zamarro M Blazquez B Durante-Rodriguez G Juarez J Valderrama J Anaerobic catabolism of aromatic compounds: a genetic and genomic view Microbiol Mol Biol Rev 2009 73 71 133 10.1128/MMBR.00021-08 19258534 

  55. 55. Radniecki T Gilroy C Semprini L Linking NE1545 gene expression with cell volume changes in Nitrosomonas europaea cells exposed to aromatic hydrocarbons Chemosphere 2011 82 514 20 10.1016/j.chemosphere.2010.10.083 21106218 

  56. 56. Jones K Trudgill P Hopper D Metabolism of p-Cresol by the Fungus Aspergillus fumigatus Microbiology 1993 59 1125 30 

  57. 57. Coon M Cytochrome P450: nature’s most versatile biological catalyst Annu Rev Pharmacol Toxicol 2005 45 1 25 10.1146/annurev.pharmtox.45.120403.100030 15832443 

  58. 58. Morant M Bak S Moller B Werck-Reichhart D Plant cytochromes P450: tools for pharmacology, plant protection and phytoremediation Curr Opin Biotechnol 2003 14 151 62 10.1016/S0958-1669(03)00024-7 12732316 

  59. 59. Metzker M Sequencing technologies-the next generation Nat Rev Genet 2010 11 31 46 10.1038/nrg2626 19997069 

  60. 60. Wakaguri H Suzuki Y Katayama T Kawashima S Kibukawa E Hiranuka K Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods Nucleic Acids Res 2009 37 D520 5 10.1093/nar/gkn856 18987005 

  61. 61. Hua W Zhang Y Song J Zhao L Wang Z De novo transcriptome sequencing in Salvia miltiorrhiza to identify genes involved in the biosynthesis of active ingredients Genomics 2011 98 272 9 10.1016/j.ygeno.2011.03.012 21473906 

  62. 62. Wang W Wang Y Zhang Q Qi Y Guo D Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing BMC Genomics 2009 10 465 10.1186/1471-2164-10-465 19818120 

  63. 63. Barrero R Chapman B Yang Y Moolhuijzen P Keeble-Gagnère G Zhang N De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes BMC Genomics 2011 12 600 10.1186/1471-2164-12-600 22151917 

  64. 64. Hao D Ge G Xiao P Zhang Y Yang L The first insight into the tissue specific taxus transcriptome via Illumina second generation sequencing PLoS ONE 2011 6 10.1371/journal.pone.0021220 

  65. 65. Liu S Li W Wu Y Chen C Lei J De novo transcriptome assembly in chili pepper ( Capsicum frutescens ) to identify genes involved in the biosynthesis of capsaicinoids PLoS ONE 2013 8 10.1371/journal.pone.0048156 23349661 

  66. 66. Vega-Arreguin J Ibarra-Laclette E Jimenez-Moraila B Martinez O Vielle-Calzada J Herrera-Estrella L Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing BMC Genomics 2009 10 299 10.1186/1471-2164-10-299 19580677 

  67. 67. Annadurai R Neethiraj R Jayakumar V Damodaran A Rao S Katta M De novo transcriptome assembly (NGS) of Curcuma longa L. rhizome reveals novel transcripts related to anticancer and antimalarial terpenoids PLoS ONE 2013 8 e56217 10.1371/journal.pone.0056217 23468859 

  68. 68. Barakat A DiLoreto D Zhang Y Smith C Baier K Powell W Comparison of the transcriptomes of American chestnut ( Castanea dentata ) and Chinese chestnut ( Castanea mollissima ) in response to the chestnut blight infection BMC Plant Biol 2009 9 51 10.1186/1471-2229-9-51 19426529 

  69. 69. Mizrachi E Hefer C Ranik M Joubert F Myburg A De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq BMC Genomics 2010 11 681 10.1186/1471-2164-11-681 21122097 

  70. 70. Alagna F D’Agostino N Torchia L Servili M Rao R Pietrella M Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development BMC Genomics 2009 10 399 10.1186/1471-2164-10-399 19709400 

  71. 71. Shi C Yang H Wei C Yu O Zhang Z Jiang C Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds BMC Genomics 2011 12 131 10.1186/1471-2164-12-131 21356090 

  72. 72. Wang Z Fang B Chen J Zhang X Luo Z Huang L De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato ( Ipomoea batatas ) BMC Genomics 2010 11 726 10.1186/1471-2164-11-726 21182800 

  73. 73. Weber A Weber K Carr K Wilkerson C Ohlrogge J Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing Plant Physiol 2007 144 32 42 10.1104/pp.107.096677 17351049 

  74. 74. Su C Chao Y Chang Y Chen W Chen C Lee A De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome Plant Cell Physiol 2011 52 1501 14 10.1093/pcp/pcr097 21771864 

  75. 75. Feng C Chen M Xu C Bai L Yin X Li X Transcriptomic analysis ofChinese bayberry ( Myrica rubra ) fruit development and ripening using RNA-Seq BMC Genomics 2012 13 19 10.1186/1471-2164-13-19 22244270 

  76. 76. Kudapa H Bharti A Cannon S Farmer A Mulaosmanovic B Kramer R A comprehensive transcriptome assembly of Pigeonpea ( Cajanus cajan L.) using sanger and second-generation sequencing platforms Mol Plant 2012 5 1020 8 10.1093/mp/ssr111 22241453 

  77. 77. Ranjan A Ichihashi Y Farhi M Zumstein K Townsley B David-Schwartz R De novo assembly and characterization of the transcriptome of the parasitic weed Cuscuta pentagona identifies genes associated with plant parasitism Plant Physiol 2014 166 1186 99 10.1104/pp.113.234864 24399359 

  78. 78. Salgado L Koop D Pinheiro D Rivallan R Guen V Nicolás M De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers BMC Genomics 2014 15 236 10.1186/1471-2164-15-236 24670056 

  79. 79. Wang Y Pan Y Liu Z Zhu X Zhai L Xu L De novo transcriptome sequencing of radish ( Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism BMC Genomics 2013 14 836 10.1186/1471-2164-14-836 24279309 

  80. 80. Trapnell C Williams BA Pertea G Mortazavi A Kwan G van Baren MJ Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation Nat Biotechnol 2010 28 511 5 10.1038/nbt.1621 20436464 

  81. 81. Wang HX Yang T Zeng Y Hu Z Identification of the gastrodianin gene ga4B in an achlorophyllous plant Gastrodia elata Orchidaceae and its expression pattern during life cycle Acta Bot Yunnanica 2007 29 345 50 

  82. 82. Hu Z Yang Z Wang J Isolation and partial characterization of an antifungal protein from Gastrodia elata corm Acta Bot Yunnan 1988 10 373 80 

  83. 83. Shiau Y Ho W Method for extraction of gastrodin in Anoectochilus formosanus Hayata J Taiwan Agric Res 2012 61 259 68 

  84. 84. Bowles D Lim E Poppenberger B Vaistij F Glycosyltransferases of lipophilic small molecules Annu Rev Plant Biol 2006 57 567 97 10.1146/annurev.arplant.57.032905.105429 16669774 

  85. 85. Gachon C Langlois-Meurinne M Saindrenan P Plant secondary metabolism glycosyltransferases: the emerging functional analysis Trends Plant Sci 2005 10 542 9 10.1016/j.tplants.2005.09.007 16214386 

  86. 86. Lairson L Henrissat B Davies G Withers S Glycosyltransferases: structures, functions, and mechanisms Annu Rev Biochem 2008 77 521 55 10.1146/annurev.biochem.76.061005.092322 18518825 

  87. 87. Kozak M Structural features in eukaryotic mRNAs that modulate the initiation of translation J Biol Chem 1991 266 19867 70 1939050 

  88. 88. Morris DR Geballe AP Upstream open reading frames as regulators of mRNA translation Mol Cell Biol 2000 20 8635 42 10.1128/MCB.20.23.8635-8642.2000 11073965 

  89. 89. Mendell JT Sharifi NA Meyers JL Martinez-Murillo F Dietz HC Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise Nat Genet 2004 36 1073 8 10.1038/ng1429 15448691 

  90. 90. Wittmann J Hol EM Jack H-M hUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay Mol Cell Biol 2006 26 1272 87 10.1128/MCB.26.4.1272-1287.2006 16449641 

  91. 91. Yepiskoposyan H Aeschimann F Nilsson D Okoniewski M Muhlemann O Autoregulation of the nonsense-mediated mRNA decay pathway in human cells RNA 2011 17 2108 18 10.1261/rna.030247.111 22028362 

  92. 92. Watatani Y Ichikawa K Nakanishi N Fujimoto M Takeda H Kimura N Is regulated by the 5′-untranslated region stress-induced translation of ATF5 mRNA J Biol Chem 2008 283 2543 53 10.1074/jbc.M707781200 18055463 

  93. 93. Spriggs KA Bushell M Willis AE Translational regulation of gene expression during conditions of cell stress Mol Cell 2010 40 228 37 10.1016/j.molcel.2010.09.028 20965418 

  94. 94. Barbosa C Romao L Translation of the human erythropoietin transcript is regulated by an upstream open reading frame in response to hypoxia RNA 2014 20 594 608 10.1261/rna.040915.113 24647661 

  95. 95. Zhao C Datta S Mandal P Xu S Hamilton T Stress-sensitive regulation of IFRD1 mRNA decay is mediated by an upstream open reading frame J Biol Chem 2010 285 8552 62 10.1074/jbc.M109.070920 20080976 

  96. 96. Hatano M Umemura M Kimura N Yamazaki T Takeda H Nakano H The 5′-untranslated region regulates ATF5 mRNA stability via nonsense-mediated mRNA decay in response to environmental stress FEBS J 2013 280 4693 707 10.1111/febs.12440 23876217 

  97. 97. Mishra A Dubey N Evaluation of some essential oils for their toxicity against fungi causing deterioration of stored food commodities Appl Environ Microbiol 1994 60 1101 15 8017906 

  98. 98. Bolger AM Lohse M Usadel B Trimmomatic: a flexible trimmer for Illumina sequence data Bioinformatics 2014 30 2114 20 10.1093/bioinformatics/btu170 24695404 

  99. 99. Grabherr MG Haas BJ Yassour M Levin JZ Thompson DA Amit I Full-length transcriptome assembly from RNA-Seq data without a reference genome Nat Biotechnol 2011 29 644 52 10.1038/nbt.1883 21572440 

  100. 100. Li B Dewey CN RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome BMC Bioinformatics 2011 12 323 10.1186/1471-2105-12-323 21816040 

  101. 101. Langmead B Trapnell C Pop M Salzberg S Ultrafast and memoryefficient alignment of short DNA sequences to the human genome Genome Biol 2009 10 R25 10.1186/gb-2009-10-3-r25 19261174 

  102. 102. Robinson MD Oshlack A A scaling normalization method for differential expression analysis of RNA-seq data Genome Biol 2010 11 R25 10.1186/gb-2010-11-3-r25 20196867 

  103. 103. Dillies MA Rau A Aubert J Hennequet-Antier C Jeanmougin M Servant N A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis Brief Bioinform 2013 14 671 83 10.1093/bib/bbs046 22988256 

  104. 104. Edgar R Domrachev M Lash AE Gene expression omnibus: NCBI gene expression and hybridization array data repository Nucleic Acids Res 2002 30 207 10 10.1093/nar/30.1.207 11752295 

  105. 105. Buchfink B Xie C Huson DH Fast and sensitive protein alignment using DIAMOND Nat Methods 2015 12 59 60 10.1038/nmeth.3176 25402007 

  106. 106. Huang H McGarvey PB Suzek BE Mazumder R Zhang J Chen Y A comprehensive protein-centric ID mapping service for molecular data integration Bioinformatics 2011 27 1190 1 10.1093/bioinformatics/btr101 21478197 

  107. 107. Kanehisa M Goto S KEGG: Kyoto encyclopedia of genes and genomes Nucleic Acids Res 2007 28 27 30 10.1093/nar/28.1.27 10592173 

  108. 108. Ritchie ME Phipson B Wu D Hu Y Law CW Shi W Limma powers differential expression analyses for RNA-sequencing and microarray studies Nucleic Acids Res 2015 43 10.1093/nar/gkv007 25605792 

  109. 109. Benjamini Y Hochberg Y Controlling the false discovery rate: a practical and powerful approach to multiple testing J Royal Stat Soc B Methodol 1995 57 289 300 

  110. 110. García-Vallejo J Van het Hof B Robben J Van Wijkb J Van Diea I Joziasse D Approach for defining endogenous reference genes in gene expression experiments Anal Biochem 2004 329 293 9 10.1016/j.ab.2004.02.037 15158490 

  111. 111. Pfaffl M Tichopad A Prgomet C Neuvians T Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper – Excel-based tool using pair-wise correlations Biotechnol Lett 2004 26 509 15 10.1023/B:BILE.0000019559.84305.47 15127793 

  112. 112. Livak K Schmittgen T Analysis of relative gene expression data using real-time quantitative PCR and the 2 -ΔΔCT method Methods 2001 25 402 8 10.1006/meth.2001.1262 11846609 

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AI-Helper
안녕하세요, AI-Helper입니다. 좌측 "선택된 텍스트"에서 텍스트를 선택하여 요약, 번역, 용어설명을 실행하세요.
※ AI-Helper는 부적절한 답변을 할 수 있습니다.

선택된 텍스트

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