$\require{mediawiki-texvc}$

연합인증

연합인증 가입 기관의 연구자들은 소속기관의 인증정보(ID와 암호)를 이용해 다른 대학, 연구기관, 서비스 공급자의 다양한 온라인 자원과 연구 데이터를 이용할 수 있습니다.

이는 여행자가 자국에서 발행 받은 여권으로 세계 각국을 자유롭게 여행할 수 있는 것과 같습니다.

연합인증으로 이용이 가능한 서비스는 NTIS, DataON, Edison, Kafe, Webinar 등이 있습니다.

한번의 인증절차만으로 연합인증 가입 서비스에 추가 로그인 없이 이용이 가능합니다.

다만, 연합인증을 위해서는 최초 1회만 인증 절차가 필요합니다. (회원이 아닐 경우 회원 가입이 필요합니다.)

연합인증 절차는 다음과 같습니다.

최초이용시에는
ScienceON에 로그인 → 연합인증 서비스 접속 → 로그인 (본인 확인 또는 회원가입) → 서비스 이용

그 이후에는
ScienceON 로그인 → 연합인증 서비스 접속 → 서비스 이용

연합인증을 활용하시면 KISTI가 제공하는 다양한 서비스를 편리하게 이용하실 수 있습니다.

Mapping the genome of Miscanthus sinensis for QTL associated with biomass productivity 원문보기

Global change biology. Bioenergy, v.7 no.4, 2015년, pp.797 - 810  

Gifford, Justin M. (Department of Crop Sciences, 307 Edward R. Madigan Laboratory, University of Illinois, 1201 West Gregory Drive, Urbana, IL, 61801, USA) ,  Chae, Won Byoung (Department of Crop Sciences, 307 Edward R. Madigan Laboratory, University of Illinois, 1201 West Gregory Drive, Urbana, IL, 61801, USA) ,  Swaminathan, Kankshita (Energy Biosciences Institute, Institute for Genomic Biology, University of Illinois Urbana, 1206 West Gregory Drive, Urbana, IL, 61801, USA) ,  Moose, Stephen P. (Energy Biosciences Institute, Institute for Genomic Biology, University of Illinois Urbana, 1206 West Gregory Drive, Urbana, IL, 61801, USA) ,  Juvik, John A. (Department of Crop Sciences, 307 Edward R. Madigan Laboratory, University of Illinois, 1201 West Gregory Drive, Urbana, IL, 61801, USA)

Abstract AI-Helper 아이콘AI-Helper

AbstractIn light of rising energy costs, lignocellulosic ethanol has been identified as a renewable alternative to petroleum‐based transportation fuels. In an attempt to reach government mandated ethanol production levels, potential plant biofeedstock candidates have been investigated, and col...

주제어

참고문헌 (68)

  1. Alonso‐Blanco C , El‐Assal SE , Coupland G , Koornneef M ( 1998 ) Analysis of natural allelic variation at flowering time loci in the Landsberg erecta and Cape Verde Islands ecotypes of Arabidopsis thaliana . Genetics , 149 , 749 – 764 . 

  2. Atienza SG , Satovic Z , Petersen KK , Dolstra O , Martin A ( 2003a ) Identification of QTLs associated with yield and its components in Miscanthus sinensis Anderss . Euphytica , 132 , 353 – 361 . 

  3. Atienza SG , Satovic Z , Petersen KK , Dolstra O , Martin A ( 2003b ) Identification of QTLs influencing agronomic traits in Miscanthus sinensis Anderss I. total height, flag‐leaf height and stem diameter . Theoretical and Applied Genetics , 107 , 123 – 129 . 

  4. Atienza SG , Satovic Z , Petersen KK , Dolstra O , Martin A ( 2003c ) Identification of QTLs influencing combustion quality in Miscanthus sinensis Anderss II. chlorine and potassium content . Theoretical and Applied Genetics , 107 , 857 – 863 . 

  5. Atienza SG , Satovic Z , Petersen KK , Dolstra O , Martin A ( 2003d ) Influencing combustion quality in Miscanthus sinensis Anderss.: identification of QTLs for calcium, phosphorus and sulphur content . Plant Breeding , 122 , 141 – 145 . 

  6. Beavis WD ( 1994 ) The power and deceit of QTL experiments: lessons from comparative QTL studies . 49th Annual Corn and Sorghum Resource Conference. American Seed Trade Association. In: The Proceedings of the 49th Annual Corn and Sorghum Industry Resource Conference (ed. Wilkinson DB ), pp. 250 – 266 , American Seed Trade Association , Washington, DC . 

  7. Buckler ES , Holland JB , Bradbury PJ et?al . ( 2009 ) The genetic architecture of maize flowering time . Science , 325 , 714 – 718 . 

  8. Cai W , Morishima H ( 2002 ) QTL clusters reflect character associations in wild and cultivated rice . Theoretical and Applied Genetics , 104 , 1217 – 1228 . 

  9. Chae WB , Hong S , Gifford JM , Rayburn AL , Widholm JM , Juvik JA ( 2013 ) Synthetic polyploidy production of Miscanthus sacchariflorus , Miscanthus sinensis , and Miscanthus x giganteus . Global Change Biology Bioenergy , 5 , 338 – 350 . 

  10. Chang S , Puryear J , Cairney J ( 1993 ) A simple and efficient method for isolating RNA from pine trees . Plant Molecular Biology Reporter , 11 , 113 – 116 . 

  11. Christian DG , Haase E ( 2001 ) Agronomy of Miscanthus . In: Miscanthus for Energy and Fibre (eds Jones M , Walsh M ), pp. 21 – 45 , James and James , London, UK . 

  12. Churchhill GA , Doerge RW ( 1994 ) Empirical threshold values for quantitative trait mapping . Genetics , 138 , 963 – 971 . 

  13. Clark LV , Brummer JE , Głowacka K et?al . (accepted, in revision) A footprint of past global climate change on the diversity and population genetic structure of Miscanthus sinensis . Annals of Botany . Available at: ( http://www.oxfordjournals.org/our_journals/annbot/recently_accepted_papers.html). 

  14. Clifton‐Brown JC , Lewandowski I ( 2000 ) Overwintering problems of newly established Miscanthus plantations can be overcome by identifying genotypes with improved rhizome cold tolerance . New Phytologist , 148 , 287 – 294 . 

  15. Clifton‐Brown JC , Lewandowski I ( 2002 ) Screening Miscanthus genotypes in field trials to optimise biomass yield and quality in Southern Germany . European Journal of Agronomy , 16 , 97 – 110 . 

  16. Clifton‐Brown JC , Jones MB , Breuer J ( 2001 ) Yield performance of M. x giganteus during a 10?year field trial in Ireland . Aspects of Applied Biology , 65 , 153 – 160 . 

  17. Clifton‐Brown JC , Lewandowski I , Bangerth F , Jones MB ( 2002 ) Comparative responses to water stress in stay‐green, rapid‐ and slow senescing genotypes of the biomass crop, Miscanthus . New Phytologist , 154 , 335 – 345 . 

  18. Darvasi A , Weinreb A , Minke V , Weller JI , Soller M ( 1993 ) Detecting marker‐QTL linkage and estimating QTL gene effect and map location using a saturated genetic map . Genetics , 134 , 943 – 951 . 

  19. Dempster AP , Laird NM , Rubin DB ( 1977 ) Maximum likelihood from incomplete data via the EM algorithm . Journal of the Royal Statistical Society, Series B , 39 , 1 – 38 . 

  20. Deuter M ( 2000 ) Breeding approaches to improvement of yield and quality in Miscanthus grown in Europe . In: European Miscanthus improvement (FAIR3 CT‐96–1392) Final Report (eds Lewandowski I , Clifton‐Brown JC ), pp. 28 – 52 , Institute of Crop Production and Grassland Research, University of Hohenheim , Stuttgart, Germany . 

  21. Dhont C , Castonguay Y , Nadeau P , Belanger G , Chalifour F‐P ( 2002 ) Alfalfa root carbohydrates and regrowth potential in response to fall harvests . Crop Sciences , 42 , 754 – 765 . 

  22. Dhont C , Castonguay Y , Nadeau P , Belanger G , Drapeau R , Chalifour F‐P ( 2004 ) Untimely fall harvest affects dry matter yield and root organic reserves in field‐grown alfalfa . Crop Sciences , 44 , 144 – 157 . 

  23. Eckebil JP , Ross WM , Gardner CO , Maranville JW ( 1977 ) Heritability estimates, genetic correlations, and predicted gains from S 1 progeny tests in three grain sorghum random‐mating populations . Crop Sciences , 17 , 373 – 377 . 

  24. Flint‐Garcia S , Thuillet AC , Yu J et?al . ( 2005 ) Maize association population: a high‐resolution platform for quantitative trait locus dissection . The Plant Journal , 44 , 1054 – 1064 . 

  25. Gauder M , Graeff‐Hönninger S , Lewandowski I , Claupein W ( 2012 ) Long‐term yield and performance of 15 different Miscanthus genotypes in southwest Germany . Annals of Applied Biology , 160 , 126 – 136 . 

  26. Heaton EA , Clifton‐Brown J , Voigt TB , Jones MB , Long SP ( 2004 ) Miscanthus for renewable energy generation: European Union experience and projections for Illinois . Mitigation and Adaptation Strategies for Global Change , 9 , 21 – 30 . 

  27. Heaton EA , Dohleman FG , Long SP ( 2008 ) Meeting US biofuel goals with less land: the potential of Miscanthus . Global Change Biology Bioenergy , 14 , 2000 – 2014 . 

  28. Hirayoshi I , Nishiwaki K , Kubono M , Murase T ( 1957 ) Cytogenetical studies on forage plants (VI): on the chromosome number of ogi ( Miscanthus sacchariflorus ) . Research Bulletin: Faculty of Agriculture, Gifu University , 8 , 8 – 13 . 

  29. Hodkinson TR , Chase MW , Takahashi C , Leitch IJ , Bennett MD , Renvoize SA ( 2002 ) The use of DNA sequencing (ITS and trnL‐F), AFLP, and fluorescent in situ hybridization to study allopolyploid Miscanthus (Poaceae) . American Journal of Botany , 89 , 279 – 286 . 

  30. Howe GT , Saruul P , Davis J , Chen THH ( 2000 ) Quantitative genetics of bud phenology, frost damage and winter survival in an F 2 family of hybrid poplars . Theoretical and Applied Genetics , 101 , 632 – 642 . 

  31. International Rice Testing Program ( 1996 ) Standard Evaluation System for Rice ( 4th edn ). International Rice Research Institute , Manila, Philippines . 

  32. Isemura T , Kaga A , Konishi S , Ando T , Tomooka N , Han OK , Vaughan DA ( 2007 ) Genome dissection of traits related to domestication in azuki bean (Vigna angularis) and comparison with other warm‐season legumes . Annals of Botany , 100 , 1053 – 1071 . 

  33. James BT , Chen C , Rudolph A et?al . ( 2011 ) Development of microsatellite markers in autopolyploid sugarcane and comparative analysis of conserved microsatellites in sorghum and sugarcane . Molecular Breeding , 30 , 661 – 669 . 

  34. Jansen RC ( 1993 ) Interval mapping of multiple quantitative trait loci . Genetics , 135 , 205 – 211 . 

  35. Jansen RC ( 1994 ) Controlling the type I and type II errors in mapping quantitative trait loci . Genetics , 138 , 871 – 881 . 

  36. Jansen RC , Stam P ( 1994 ) High resolution of quantitative traits into multiple loci via interval mapping . Genetics , 136 , 1447 – 1455 . 

  37. Jensen E , Farrar K , Thomas‐Jones S , Hastings A , Donnison I , Clifton‐Brown J ( 2011 ) Characterization of flowering time diversity in Miscanthus species . Global Change Biology Bioenergy , 3 , 387 – 400 . 

  38. Jenson E , Robson P , Norris J , Cookson A , Farrar K , Donnison I , Clifton‐Brown J ( 2012 ) Flowering induction in the bioenergy grass Miscanthus sacchariflorus is a quantitative short‐day response, whilst delayed flowering under long days increases biomass accumulation . Journal of Experimental Botany , 64 , 541 – 552 . 

  39. Jeżowski S ( 2008 ) Yield traits of six clones of Miscanthus in the first 3?years following planting in Poland . Industrial Crops and Products , 27 , 65 – 68 . 

  40. Khavkin E , Coe E ( 1997 ) Mapped genomic locations for developmental functions and QTLs reflect concerted groups in maize ( Zea mays L.) . Theoretical and Applied Genetics , 95 , 343 – 352 . 

  41. Kim C , Zhang D , Auckland SA et?al . ( 2012 ) SSR‐based genetic maps of Miscanthus sinensis and M . sacchariflorus , and their comparison to sorghum . Theoretical and Applied Genetics , 124 , 1325 – 1338 . 

  42. Kirkpatrick JR ( 2013 ) Construction and analysis of the Miscanthus genespace , M.S. thesis, Univ, Illinois . 

  43. Kuehl RO ( 2000 ) Design of experiments: Statistical principles of research design and analysis . Duxbury Press , Pacific Grove, CA 

  44. Lander ES , Botstein D ( 1989 ) Mapping mendelian factors underlying quantitative traits using RFLP linkage maps . Genetics , 121 , 185 – 199 . 

  45. Le Thierry D'ennequin M , Toupance B , Robert T , Godelle B , Gouyon PH ( 1999 ) Plant domestication: a model for studying the selection of linkage . Journal of Evolutionary Biology , 12 , 1138 – 1147 . 

  46. Lewandowski I , Clifton‐Brown JC , Scurlock JMO , Huisman W ( 2000 ) Miscanthus: European experience with a novel energy crop . Biomass and Bioenergy , 19 , 209 – 227 . 

  47. Lin YR , Schertz KF , Paterson AH ( 1995 ) Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population . Genetics , 141 , 391 – 411 . 

  48. Linde‐Laursen IB ( 1993 ) Cytogenetic analysis of Miscanthus ‘ Giganteus ’, an interspecific hybrid . Hereditas , 119 , 297 – 300 . 

  49. Ma XF , Jensen E , Alexandrov N et?al . ( 2012 ) High resolution genetic mapping by genome sequencing reveals genome duplication and tetraploid genetic structure of the diploid Miscanthus sinensis . PLoS ONE , 7 , e33821 . 

  50. Mace ES , Jordan DR ( 2011 ) Integrating sorghum whole genome sequence information with a compendium of sorghum QTL studies reveals uneven distribution of QTL and of gene‐rich regions with significant implications for crop improvement . Theoretical and Applied Genetics , 123 , 169 – 191 . 

  51. Mao D , Liu T , Xu C , Li X , Xing Y ( 2011 ) Epistasis and complementary gene action adequately account for the genetic bases of transgressive segregation of kilo‐grain weight in rice . Euphytica , 180 , 261 – 271 . 

  52. Nishiwaki A , Mizuguti A , Kuwabara S et?al . ( 2011 ) Discovery of natural Miscanthus (Poaceae) triploid plants in sympatric populations of Miscanthus sacchariflorus and Miscanthus sinensis in southern Japan . American Journal of Botany , 98 , 154 – 159 . 

  53. Noor MAF , Cunningham AL , Larkin JC ( 2001 ) Consequences of recombination rate variation on quantitative trait locus mapping studies: simulations based on the Drosophila melanogaster genome . Genetics , 159 , 581 – 588 . 

  54. Onishi K , Horiuchi Y , Ishigoh‐Oka N , Takagi K , Ichikawa N , Maruoka M , Sano Y ( 2007 ) A QTL cluster for plant architecture and its ecological significance in Asian wild rice . Breeding Science , 57 , 7 – 16 . 

  55. van Ooijen JW ( 2004 ) MapQTL5 TM , Software for the mapping of quantitative trait loci in experimental populations . Kyazma BV , Wageningen, the Netherlands . 

  56. van Ooijen JW ( 2011 ) Multipoint maximum likelihood mapping in a full‐sib family of an outbreeding species . Genetics Research , 93 , 343 – 349 . 

  57. Rieseberg LH , Archer MA , Wayne RK ( 1999 ) Transgressive segregation, adaptation and speciation . Heredity , 83 , 363 – 372 . 

  58. Rieseberg LH , Widmer A , Arntz AM , Burke JM ( 2003 ) The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations . Philosophical Transactions of the Royal Society of London Series B, Biological Sciences , 358 , 1141 – 1147 . 

  59. Sacks EJ , Juvik JA , Lin Q , Stewart JR , Yamada T ( 2013 ) The gene pool of Miscanthus species and its improvement . In: Genomics of the Saccharinae (ed. Paterson AH ), pp. 73 – 101 . Springer , New York . 

  60. Schon CC , Utz HF , Groh S , Truberg B , Openshaw S , Melchinger AE ( 2004 ) Quantitative trait locus mapping based on resampling in a vast maize testcross experiment and its relevance to quantitative genetics for complex traits . Genetics , 167 , 485 – 498 . 

  61. Sewell MM , Bassoni DL , Megraw RA , Wheeler NC , Neale DB ( 2000 ) Identification of QTLs influencing wood property traits in loblolly pine ( Pinus taeda L.). I. physical wood properties . Theoretical and Applied Genetics , 101 , 1273 – 1281 . 

  62. Swaminathan K , Alabady MS , Varala K et?al . ( 2010 ) Genomic and small RNA sequencing of Miscanthus x giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses . Genome Biology , 11 , R12 . 

  63. Swaminathan K , Chae WB , Mitros T et?al . ( 2012 ) A framework genetic map for Miscanthus sinensis from RNAseq‐based markers shows recent tetraploidy . BMC Genomics , 13 , 142 . 

  64. Tomar SS , Sivakumar S , Ganesamurthy K ( 2012 ) Genetic variability and heritability studies for different quantitative triats in sweet sorghum [ Sorghum bicolor (L.) Moench] genotypes . Electronic Journal of Plant Breeding , 3 , 806 – 810 . 

  65. Visscher PM , Thompson R , Haley CS ( 1996 ) Confidence intervals in QTL mapping by bootstrapping . Genetics , 143 , 1013 – 1020 . 

  66. White LM ( 1973 ) Carbohydrate reserves of grasses: a review . Journal of Range Management , 26 , 13 – 18 . 

  67. Xu Y , McCouch SR , Shen Z ( 1998 ) Transgressive segregation of tiller angle in rice caused by complementary gene action . Crop Sciences , 38 , 12 – 19 . 

  68. Yano M , Harushima Y , Nagamura Y , Kurata N , Minobe Y , Sasaki T ( 1997 ) Identification of quantitative trait loci controlling heading date in rice using a high‐density linkage map . Theoretical and Applied Genetics , 95 , 1025 – 1032 . 

관련 콘텐츠

이 논문과 함께 이용한 콘텐츠

저작권 관리 안내
섹션별 컨텐츠 바로가기

AI-Helper ※ AI-Helper는 오픈소스 모델을 사용합니다.

AI-Helper 아이콘
AI-Helper
안녕하세요, AI-Helper입니다. 좌측 "선택된 텍스트"에서 텍스트를 선택하여 요약, 번역, 용어설명을 실행하세요.
※ AI-Helper는 부적절한 답변을 할 수 있습니다.

선택된 텍스트

맨위로